View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1934_low_1 (Length: 528)
Name: NF1934_low_1
Description: NF1934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1934_low_1 |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 37 - 519
Target Start/End: Original strand, 25440 - 25919
Alignment:
| Q |
37 |
ccgctgatgatctcaagcaagacaacgccaaaactgaaaacatctgactttgttgagaaatatccatccaaggcatactcaggagacatgtacccactgt |
136 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25440 |
ccgctgatgatctcaagcaagacaacgccaaaactgaaaacatctgactttgttgagaaatatccatccaaggcatactcaggagacatgtacccgctgt |
25539 |
T |
|
| Q |
137 |
cgacacaagataaccactcgtatgaaggactaaatatcccattatataaaaatttattatatatctaaataaatatggttgagaaattcatgata-taaa |
235 |
Q |
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|||||||||| ||||||||||| || |||||||||||||||||| ||||||||| || |||||| |||||||| ||||||||||||||| | | ||| |
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| T |
25540 |
cgacacaagaaaaccactcgtacaaataactaaatatcccattatacaaaaatttactagatatcttaataaataaggttgagaaattcataaaaataag |
25639 |
T |
|
| Q |
236 |
gttattgnnnnnnntgtgagaagaatttcattttgaatagttgagaaagcaaaaaacaggagtnnnnnnnggactaagaattgaacttactatgtaccaa |
335 |
Q |
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| T |
25640 |
gttattgaaaacaatgtgagaagaatttcaattcgaatactc-agaaagcaaaaagcaggagtaaaa---ggcctaagaactgaacttactatgtaccaa |
25735 |
T |
|
| Q |
336 |
caaccctctctgtgcttgcctcagtttccttgcctccaactattcttgctagtccaaaatctgagattttcggttgcatctcctcgtctagaagaatgtt |
435 |
Q |
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|||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25736 |
caactctctctgtgcttgcctcagtttctttccctccaactattcttgctagtccaaaatctgagattttcggttgcatctcctcgtctagaagaatgtt |
25835 |
T |
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| Q |
436 |
gctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacgagcaattccgagaattat |
519 |
Q |
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| T |
25836 |
gctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacgagcaattccgagaattat |
25919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 5e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 314 - 519
Target Start/End: Original strand, 21917881 - 21918086
Alignment:
| Q |
314 |
aattgaacttactatgtaccaacaaccctctctgtgcttgcctcagtttccttgcctccaactattcttgctagtccaaaatctgagattttcggttgca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| | ||||||||| |||||||||||||||||| ||||||| |
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| T |
21917881 |
aattgaacttactatgtaccaacaaccctctctgtgcttgcctctgtttctttgcctgcaaatgttcttgctattccaaaatctgagatttttggttgca |
21917980 |
T |
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| Q |
414 |
tctcctcgtctagaagaatgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacgagcaattccgag |
513 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21917981 |
tctcctcatctagaagaatgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacgggcaattccgag |
21918080 |
T |
|
| Q |
514 |
aattat |
519 |
Q |
| |
|
|||||| |
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| T |
21918081 |
aattat |
21918086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 21917602 - 21917697
Alignment:
| Q |
40 |
ctgatgatctcaagcaagacaacgccaaaactgaaaacatctgactttgttgagaaatatccatccaaggcatactcaggagacatgtacccactgtc |
137 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
21917602 |
ctgatgatctcaagcaagacaacgccaa--ctgaaaacatctgactttgttgaaatatatccatccaacgcatactcaggagacatgtacccgctgtc |
21917697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 461
Target Start/End: Complemental strand, 21936536 - 21936391
Alignment:
| Q |
316 |
ttgaacttactatgtaccaacaaccctctctgtgcttgcctcagtttccttgcctccaactattcttgctagtccaaaatctgagattttcggttgcatc |
415 |
Q |
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||||||||||||||| ||||| || || |||||| | || | || || || ||||||| ||| || |||| ||||| ||||||||||| || | | || |
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| T |
21936536 |
ttgaacttactatgttccaaccactctttctgtgttcgctaccgtctcttttcctccaaatatcctcgctaagccaaagtctgagattttagggttcttc |
21936437 |
T |
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| Q |
416 |
tcctcgtctagaagaatgttgctagttttcaaatctcggtgaataa |
461 |
Q |
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|| |||||||| ||||||||||| | ||||| ||||| ||||||| |
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| T |
21936436 |
tcttcgtctagtagaatgttgcttgctttcagatctctatgaataa |
21936391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 368 - 489
Target Start/End: Complemental strand, 3102504 - 3102383
Alignment:
| Q |
368 |
cctccaactattcttgctagtccaaaatctgagattttcggttgcatctcctcgtctagaagaatgttgctagttttcaaatctcggtgaataactctaa |
467 |
Q |
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||||||| | ||||||| |||||||||||||||||||| || | ||| || | |||| ||||| ||||||| ||||| |||| |||||||||||| | |
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| T |
3102504 |
cctccaaatgttcttgcaagtccaaaatctgagatttttggattcatttcttgatctaatagaatattgctagctttcaggtctctgtgaataactctga |
3102405 |
T |
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| Q |
468 |
gtcttgagtcttgatgaagata |
489 |
Q |
| |
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| T |
3102404 |
gcctagagtcctcatgaagata |
3102383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 3123105 - 3123059
Alignment:
| Q |
40 |
ctgatgatctcaagcaagacaacgccaaaactgaaaacatctgactt |
86 |
Q |
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||||||||||| ||||| | ||||||||| ||||||||||||||||| |
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| T |
3123105 |
ctgatgatctctagcaaaagaacgccaaagctgaaaacatctgactt |
3123059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 3132743 - 3132789
Alignment:
| Q |
40 |
ctgatgatctcaagcaagacaacgccaaaactgaaaacatctgactt |
86 |
Q |
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||||||||||| ||||| | ||||||||| ||||||||||||||||| |
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| T |
3132743 |
ctgatgatctctagcaaaagaacgccaaagctgaaaacatctgactt |
3132789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 510
Target Start/End: Complemental strand, 19379486 - 19379401
Alignment:
| Q |
425 |
agaagaatgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacgagcaattcc |
510 |
Q |
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||||| |||||||||| |||||| |||| |||||| | | | |||||||||| | |||||||||||||| ||| |||||||||| |
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| T |
19379486 |
agaagtatgttgctagctttcaagtctctgtgaatgattttgagtcttgagtacttatgaagatagagcaatccttgagcaattcc |
19379401 |
T |
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