View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1934_low_10 (Length: 281)
Name: NF1934_low_10
Description: NF1934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1934_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 21477024 - 21476791
Alignment:
| Q |
1 |
attcactaattcagtaaaccgagcatgggcaagagttggatttagaaatagcaatttggcccattacacgagattaaatagcccagaaacccgcaatcag |
100 |
Q |
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| T |
21477024 |
attcactaattcagtaaaccgagcatgggcaagagttgggtttagaaatagcaatttggcccattacaagagattaaatagcccagaaacccgcaatcag |
21476925 |
T |
|
| Q |
101 |
ctttatattcgcagttttcaccatcaagacgtcaaaactggattttgcattcaacatgaaagttgtaaccttatatacattaactctcaaatcagcccca |
200 |
Q |
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| T |
21476924 |
ctttatattcgcagttttcaccatcaagacgtcaaaactggattttgcattcgacatgaaagttgtaaccttatatacattaactctcaaatcagcccca |
21476825 |
T |
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| Q |
201 |
acataaataaacatgctaaaaatattatcctaag |
234 |
Q |
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| T |
21476824 |
acataaataaacatgctaaaaatattatcctaag |
21476791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 33319962 - 33320041
Alignment:
| Q |
26 |
tgggcaagagttggatttagaaatagcaatttggcccattacacgagattaaatagcccagaaacccgcaatcagcttta |
105 |
Q |
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| T |
33319962 |
tgggcaagagttaggtttataaatagcaattcggcccactacaagagattaaatggcccaaaaatccgcaatcagcttta |
33320041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 13213705 - 13213778
Alignment:
| Q |
31 |
aagagttggatttagaaatagcaatttggcccattacacgagattaaatagcccagaaacccgcaatcagcttta |
105 |
Q |
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| T |
13213705 |
aagagttgggtttagaaata-caatttggaccattacaagagattaaatggccaagaaacccgcagtcaacttta |
13213778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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