View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1934_low_12 (Length: 262)
Name: NF1934_low_12
Description: NF1934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1934_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 3385350 - 3385121
Alignment:
| Q |
18 |
tgatcatggaagatcacttacaacttgaggagcatctctgccactagatgcgatcttgttacttctgtagtcgttagaaggacaaaagttgtcatgcaaa |
117 |
Q |
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| T |
3385350 |
tgatcatggaagatcacttacaacttgaggagcatctttgccactggatgcgatcttgttacttctgtaatcattagaagaacaaaacttgtcatgcaaa |
3385251 |
T |
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| Q |
118 |
gtccaaaggtaaggattaaccaaacacatattatacaaaatcgtacaatctatacattgcccaaacttttgagatttgtaaatagcatcatctttcttga |
217 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3385250 |
gtccaaaggtaaggattaaccaaacatatattatacaaaatcgtacaatctagacattgcccaaacttttgagatttgtaaatagcatcatctttcttca |
3385151 |
T |
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| Q |
218 |
gttgattacctctccctccatcctcagcat |
247 |
Q |
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||||||||||||| ||||||||||| |||| |
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| T |
3385150 |
gttgattacctcttcctccatcctcggcat |
3385121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 41804632 - 41804403
Alignment:
| Q |
18 |
tgatcatggaagatcacttacaacttgaggagcatctctgccactagatgcgatcttgttacttctgtagtcgttagaaggacaaaagttgtcatgcaaa |
117 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| || |||||||||||||| ||||||||||| |
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| T |
41804632 |
tgatcatggaatatcacttacaacttgaggagcatctttgccactagatgcgatattgttacttgtgtgatctatagaaggacaaaaggtgtcatgcaaa |
41804533 |
T |
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| Q |
118 |
gtccaaaggtaaggattaaccaaacacatattatacaaaatcgtacaatctatacattgcccaaacttttgagatttgtaaatagcatcatctttcttga |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| || |||||||||||||||||||||||| ||||||||||||| |
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| T |
41804532 |
gtccaaaggtaaggattaaccaaacacattttatacaaaatcatacaatctatacaatgaccaaacttttgagatttgtaaataccatcatctttctttg |
41804433 |
T |
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| Q |
218 |
gttgattacctctccctccatcctcagcat |
247 |
Q |
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|| |||||||||| |||||||||||||||| |
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| T |
41804432 |
gtggattacctcttcctccatcctcagcat |
41804403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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