View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1934_low_14 (Length: 255)
Name: NF1934_low_14
Description: NF1934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1934_low_14 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 45099456 - 45099694
Alignment:
| Q |
17 |
atgtgtttgtgtatgtgtaagtgtgcttgtatgtttaaagtactttactttgaaatcaagatgaatggttcttctgttgcttttattttctctaaatttg |
116 |
Q |
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| T |
45099456 |
atgtgtttgtgtctgtgtatgtgtgcttctatgtttaaagtactttactttgaaatagagatgaatggttcttctgttgcttttattttatttaaatttg |
45099555 |
T |
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| Q |
117 |
gtggaattgaagacaaaattttggtgctcatatggtacttggtagcccttctttctcaccaaaaatgtccagctataactgatttatggtagtttcctta |
216 |
Q |
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| T |
45099556 |
gtggaattgaagacaaaattttggtgctcatatggtacttggtagcccttctttctctccaaaaatgtccatctataactcatttatggtagtttcctta |
45099655 |
T |
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| Q |
217 |
tctacaaatttgacgtcggtccaatgcaatagtataatc |
255 |
Q |
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| T |
45099656 |
tctacaaatttgacgttggtccaatgcaatagtataatc |
45099694 |
T |
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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 19110505 - 19110564
Alignment:
| Q |
46 |
tatgtttaaagtactttactttgaaatcaagatgaatggttcttctgttgcttttatttt |
105 |
Q |
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| T |
19110505 |
tatgtttaaagtactttaatttgaaatagagatgaatgactcttctgtagcttttttttt |
19110564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 12227929 - 12228007
Alignment:
| Q |
24 |
tgtgtatgtgtaagtgtgcttgtatgtttaaagtactttactttgaaatcaagatgaatggttcttctgttgcttttat |
102 |
Q |
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| T |
12227929 |
tgtgtttgtgtatgtgtgcttgtatgtttaaagtactttactttgaaatcgagatgaatggttcttctgttgcttttat |
12228007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 12228005 - 12228069
Alignment:
| Q |
190 |
tataactgatttatggtagtttccttatctacaaatttgacgtcggtccaatgcaatagtataat |
254 |
Q |
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| T |
12228005 |
tataactgatttatggtagtttccttatctacaaatttgacgccggtccaatgcaatagtataat |
12228069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 35168168 - 35168102
Alignment:
| Q |
163 |
ccttctttctca-ccaaaaatgtccagctataactgatttatggtagtttccttatctacaaatttg |
228 |
Q |
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| T |
35168168 |
ccttctttctcttccaaaaatgccctgttataattgatttatggtagtttccttatctacaaatttg |
35168102 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Original strand, 7963313 - 7963367
Alignment:
| Q |
46 |
tatgtttaaagtactttactttgaaatcaagatgaatggttcttctgttgctttt |
100 |
Q |
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| T |
7963313 |
tatgtttaaagtactttaatttgaaatagagatgaatgactcttctgtagctttt |
7963367 |
T |
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