View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1934_low_15 (Length: 253)
Name: NF1934_low_15
Description: NF1934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1934_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 29138376 - 29138596
Alignment:
| Q |
18 |
tgtccttgagtttgaagatcgtaagcttgttccccttccacaggctgatccattgagaaattatacttctggtgaaacacggggaggagttgatcgaagt |
117 |
Q |
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| T |
29138376 |
tgtccttgagtttgaagatcgtaagcttgttccccttccacaggctgatccattgagaaattatacttctggtgaaacacggggaggagttgatcgaagt |
29138475 |
T |
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| Q |
118 |
gatgtgaaacccttacagattgttcagccagatggtccaagctttcgtgtcaatggaaacttcattcaatggcagaaggtggttcattgtctatgtgctt |
217 |
Q |
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| T |
29138476 |
gatgtgaaacccttacagattattcagccagatggtccaagctttcgtgtcaatggaaacttcattcaatggcagaaggtggttcatcgtctatgtgctt |
29138575 |
T |
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| Q |
218 |
tttctaaaattatttcctatg |
238 |
Q |
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| T |
29138576 |
tttctaaaattatttcatatg |
29138596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 14296346 - 14296519
Alignment:
| Q |
25 |
gagtttgaagatcgtaagcttgttccccttccacaggctgatccattgagaaattatacttctggtgaaacacggggaggagttgatcgaagtgatgtga |
124 |
Q |
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| T |
14296346 |
gagtttgaagaccgtaaactaatccctcttccacctactgatccacttagaaattatacttccggtgaaacacggggaggagttgatagaagtgatgtga |
14296445 |
T |
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| Q |
125 |
aacccttacagattgttcagccagatggtccaagctttcgtgtcaatggaaacttcattcaatggcagaaggtg |
198 |
Q |
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| T |
14296446 |
aacccttacagattattcagcctgaaggtccaagttttcgtgtcaatggtcacttcattcaatggcagaaggtg |
14296519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 173
Target Start/End: Original strand, 34613235 - 34613295
Alignment:
| Q |
113 |
gaagtgatgtgaaacccttacagattgttcagccagatggtccaagctttcgtgtcaatgg |
173 |
Q |
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| T |
34613235 |
gaagtgatgtgaaacctttacaaattattcaacctgaaggtccaagctttcgtgtcaatgg |
34613295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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