View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1934_low_18 (Length: 213)
Name: NF1934_low_18
Description: NF1934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1934_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 1e-61; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 74 - 197
Target Start/End: Complemental strand, 5922627 - 5922504
Alignment:
| Q |
74 |
aagcaatttgaacttgttagtagtaacatagttttcttctaatgatcataatagcatgcaccgtccatgggaactttaaattcaccaagtatcaaaactt |
173 |
Q |
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| T |
5922627 |
aagcaatttgaacttgttagtagtaacatagttttcttctaatgatcataatagcatgcaccgtccatgggaactttaaattcaccaagtatcaaaactt |
5922528 |
T |
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| Q |
174 |
ggatattgactcatgttttatatg |
197 |
Q |
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| T |
5922527 |
ggatattgactcacgttttatatg |
5922504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 75 - 197
Target Start/End: Complemental strand, 5913544 - 5913426
Alignment:
| Q |
75 |
agcaatttgaacttgttagtagtaacatagttttcttctaatgatcataatagcatgcaccgtccatgggaactttaaattcaccaagtatcaaaacttg |
174 |
Q |
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| T |
5913544 |
agcaatttgaacttgttaggagtaacatagttttctcctaatgatcataatagca----ccgtccacgggaacattaaattcaccaagtatcaaaacttg |
5913449 |
T |
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| Q |
175 |
gatattgactcatgttttatatg |
197 |
Q |
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| T |
5913448 |
gacattgactcacgttttatatg |
5913426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 5922702 - 5922658
Alignment:
| Q |
31 |
aacctcaaaagttcaagccctatctttttaccattgaatcttaaag |
76 |
Q |
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| T |
5922702 |
aacctcaaaagttcaagcc-tatctttttaccattggatcttaaag |
5922658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 5913621 - 5913576
Alignment:
| Q |
31 |
aacctcaaaagttcaagccctatctttttaccattgaatcttaaag |
76 |
Q |
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| T |
5913621 |
aacctcaaaagtttaaagcctatctttttaccattggatcttaaag |
5913576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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