View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1934_low_6 (Length: 388)
Name: NF1934_low_6
Description: NF1934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1934_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 113 - 268
Target Start/End: Complemental strand, 10582095 - 10581941
Alignment:
| Q |
113 |
gttctaagataaatattgatgaatattcagaatttattaagaagactaga-tgaagaatgcatattttagtagatcaagtccttcgattgaagaatacaa |
211 |
Q |
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| T |
10582095 |
gttctaagataaatattgatgaatattcacagtgcttgaag-agac-agagcgaagaatacatattttagtagatcaagtcctttgagtgaagaatgcaa |
10581998 |
T |
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| Q |
212 |
aatctctctgcaaggagaggtctagatgtagcaacaagttgttttgagttagtataa |
268 |
Q |
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| T |
10581997 |
aatctctctgcaaggagaggtctagatgtagcaaaaatttgttttgagttagtataa |
10581941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 10582493 - 10582430
Alignment:
| Q |
5 |
catgttctgaaaattatgcatctgaagacttaagttacaatgaaatggttatgttgaacatccat |
69 |
Q |
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| T |
10582493 |
catgttctgaaaattttgcttctgaatact-aagttacaatgagatggttatgttgaacatccat |
10582430 |
T |
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