View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1934_low_8 (Length: 325)
Name: NF1934_low_8
Description: NF1934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1934_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 9355202 - 9355440
Alignment:
| Q |
20 |
aaaagcgggatgacaattttatttccaggaaaatctcaacagtatgctataatggcagagcagccacttggcgctacatctacagaacttccacgcgcca |
119 |
Q |
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| T |
9355202 |
aaaaacgggatgacaattttatttctaggaaaatctcaacagtatgctataatggcagagcagccacttgccgctacatctacagaacttccacgcgcca |
9355301 |
T |
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| Q |
120 |
cgttttccaactacagcagtctggtgctattgctgccactataatggaagattatggctgttgcatattgtcacaaagcccatctttaccctgttcctcc |
219 |
Q |
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| T |
9355302 |
cgttttccaactacagtaatctggtgctattgctgccactataatggaagattatggctgttgcatattgtcacaaagcccatctttaccccgttcctcc |
9355401 |
T |
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| Q |
220 |
ccacaaatgactatgatggcttctgcttcaattaaaatg |
258 |
Q |
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| T |
9355402 |
ccacaaatgactatgatggcttttgcttcaattaaaatg |
9355440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 30 - 258
Target Start/End: Original strand, 9345802 - 9346030
Alignment:
| Q |
30 |
tgacaattttatttccaggaaaatctcaacagtatgctataatggcagagcagccacttggcgctacatctacagaacttccacgcgccacgttttccaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9345802 |
tgacaattttatttccaggaaaatctcaacagtatgctataatggcagagcagccacttgccgctacatctacagaacttccacgcgccacgttttccaa |
9345901 |
T |
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| Q |
130 |
ctacagcagtctggtgctattgctgccactataatggaagattatggctgttgcatattgtcacaaagcccatctttaccctgttcctccccacaaatga |
229 |
Q |
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| T |
9345902 |
ctacagtaatctggtgctattgctgccactataatggaagattatggctgttgagtattgtcacaaagcccatctttaccccgttcctccccacaaatga |
9346001 |
T |
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| Q |
230 |
ctatgatggcttctgcttcaattaaaatg |
258 |
Q |
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| T |
9346002 |
ctatgatggcttttgcttcaattaaaatg |
9346030 |
T |
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