View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19350_low_2 (Length: 326)
Name: NF19350_low_2
Description: NF19350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19350_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 1248484 - 1248808
Alignment:
| Q |
1 |
cggtctctttcatatatttttggagttaatgcacagttctttcctttgctggatgtatgtacttggtgctccatgtttggcttgtttccccatatctccc |
100 |
Q |
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| T |
1248484 |
cggtctctttcatatatttttagagttaatgcgcagttctttcctttgctggatgtatgtacgtggtgctccatgtttggcttgtttccccatatctccc |
1248583 |
T |
|
| Q |
101 |
agtgatttctgtttttattttagaaa-acaaaaaatatactatgttttttagaaagtggaacactgggtaatgatattaagatttaaatactatg-nnnn |
198 |
Q |
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|||||||||||||||||||||||||| | |||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1248584 |
agtgatttctgtttttattttagaaagaaaaaaaaaatactatgttctttagaaagtggaacactgggtagtgatattaagatttaaatactatgttttt |
1248683 |
T |
|
| Q |
199 |
nnncctacaaaattataaaattgaatttcttgtctccat--------nnnnnnnnntctcagtttttaggtcctacaaaattatatcgcaaataatttta |
290 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1248684 |
tttcctacaaaattataaaattgaatttcttgtctccataaaaaaaaaaaaaataatctcagttttttggtcctacaaaattatatcgcaaataatttta |
1248783 |
T |
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| Q |
291 |
gtcattattgttaagttgacatatt |
315 |
Q |
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||||||||||||| ||||||||||| |
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| T |
1248784 |
gtcattattgttaggttgacatatt |
1248808 |
T |
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