View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19350_low_3 (Length: 311)
Name: NF19350_low_3
Description: NF19350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19350_low_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 626680 - 626386
Alignment:
| Q |
1 |
ctaattctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatgatcataattctggtgaagatttcttctgagacag |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
626680 |
ctaattctttcatctccttcatattcaattttgaagatattccatatttcaaatgctgatttgatgatcataattctggtgaagatttcttctgagacaa |
626581 |
T |
|
| Q |
101 |
cagcaaacaaagtagcccttgcttttgactttcttgttttcctttccttgtgattttttatctgagctattgttggattgtctgacaaaggaagaacttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
626580 |
tagcaaacaaagtagcccttgcttttgactttcttgttttcctttccttgtgattttttatctgagccattgttggattgtctgacaaaggaagaacttc |
626481 |
T |
|
| Q |
201 |
gtagtcctcctcaacagcttcccagaggtcatttgcctctaaatacgcctccatccttgctgcccatatatgatagttttcaccatcaaacacag |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
626480 |
gtagtcctcctcaacagcttcccagaggtcatttgcctctaaatacgcctccatccttgctgcccatatatgatagttttcaccatcaaacacag |
626386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 29868156 - 29867860
Alignment:
| Q |
1 |
ctaattctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatgatcataattctggtgaagatttcttctgagacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29868156 |
ctaattctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatggtcataattctggtgaagatttcttctgagacag |
29868057 |
T |
|
| Q |
101 |
cagcaaacaaagtagcccttgcttttgactttcttgttttcctttccttgtgattttttatctgagctattgttggattgtctgacaaaggaagaacttc |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29868056 |
cagcaaacaaagtagctcttgcttttgactttcttgttttcctttccttgtgattttttatctgagccattgttggattgtctgacaaaggaagaacttc |
29867957 |
T |
|
| Q |
201 |
gtagtcctcctcaacagcttcccagaggtcatttgcctctaaatacgcctccatccttgctgcccatatatgatagttttcaccatcaaacacaggt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29867956 |
gtagtcctcctcaacagcttcccagaggtcatttgcctctaagtatgcctctattcttgctgcccatatatgatagttttcaccatcaaacacaggt |
29867860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 20786193 - 20786489
Alignment:
| Q |
1 |
ctaattctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatgatcataattctggtgaagatttcttctgagacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20786193 |
ctaattctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatggtcataattctggtgaagatttcttctgagacag |
20786292 |
T |
|
| Q |
101 |
cagcaaacaaagtagcccttgcttttgactttcttgttttcctttccttgtgattttttatctgagctattgttggattgtctgacaaaggaagaacttc |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20786293 |
cagcaaacaaagtagctcttgcttttgactttcttgttttcctttccttgtgattttttatctgagccattgttggattgtctgacaaaggaagaacttc |
20786392 |
T |
|
| Q |
201 |
gtagtcctcctcaacagcttcccagaggtcatttgcctctaaatacgcctccatccttgctgcccatatatgatagttttcaccatcaaacacaggt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20786393 |
gtagtcctcctcaacagcttcccagaggtcatttgcctctaagtatgcctctattcttgctgcccatatatgatagttttcaccatcaaacacaggt |
20786489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 29469868 - 29469572
Alignment:
| Q |
1 |
ctaattctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatgatcataattctggtgaagatttcttctgagacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29469868 |
ctaattctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatggtcataattctggtgaagatttcttctgagacaa |
29469769 |
T |
|
| Q |
101 |
cagcaaacaaagtagcccttgcttttgactttcttgttttcctttccttgtgattttttatctgagctattgttggattgtctgacaaaggaagaacttc |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29469768 |
cagcaaacaaagtagctcttgcttttgactttcttgttttcctttccttgtgattttttatctgagccattgttggattgtctgacaaaggaagaacttc |
29469669 |
T |
|
| Q |
201 |
gtagtcctcctcaacagcttcccagaggtcatttgcctctaaatacgcctccatccttgctgcccatatatgatagttttcaccatcaaacacaggt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29469668 |
gtagtcctcctcaacagcttcccagaggtcatttgcctctaagtatgcctctattcttgctgcccatatatgatagttttcaccatcaaacacaggt |
29469572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 19965622 - 19965326
Alignment:
| Q |
1 |
ctaattctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatgatcataattctggtgaagatttcttctgagacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19965622 |
ctaattctttcatctccttcatattcagttttaaggaaattccatatttcaaatgctgatttgatggtcataattctggtgaagatttcttctgagacag |
19965523 |
T |
|
| Q |
101 |
cagcaaacaaagtagcccttgcttttgactttcttgttttcctttccttgtgattttttatctgagctattgttggattgtctgacaaaggaagaacttc |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19965522 |
cagcaaacaaagtagctcttgcttttgactttcttgttttcctttccttgtgattttttatctgagccattgttggattgtctgacaaaggaagaacttc |
19965423 |
T |
|
| Q |
201 |
gtagtcctcctcaacagcttcccagaggtcatttgcctctaaatacgcctccatccttgctgcccatatatgatagttttcaccatcaaacacaggt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19965422 |
gtagtcctcctcaacagcttcccagaggtcatttgcctctaagtatgcctctattcttgctgcccatatatgatagttttcaccatcaaacacaggt |
19965326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 21027374 - 21027670
Alignment:
| Q |
1 |
ctaattctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatgatcataattctggtgaagatttcttctgagacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21027374 |
ctaattctttcatctccttcatattcagttttaaggaaattccatatttcaaatgctgatttgatggtcataattctggtgaagatttcttctgagacag |
21027473 |
T |
|
| Q |
101 |
cagcaaacaaagtagcccttgcttttgactttcttgttttcctttccttgtgattttttatctgagctattgttggattgtctgacaaaggaagaacttc |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21027474 |
cagcaaacaaagtagctcttgcttttgactttcttgttttcctttccttgtgattttttatctgagccattgttggattgtctgacaaaggaagaacttc |
21027573 |
T |
|
| Q |
201 |
gtagtcctcctcaacagcttcccagaggtcatttgcctctaaatacgcctccatccttgctgcccatatatgatagttttcaccatcaaacacaggt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21027574 |
gtagtcctcctcaacagcttcccagaggtcatttgcctctaagtatgcctctattcttgctgcccatatatgatagttttcaccatcaaacacaggt |
21027670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 186 - 295
Target Start/End: Original strand, 6367935 - 6368044
Alignment:
| Q |
186 |
caaaggaagaacttcgtagtcctcctcaacagcttcccagaggtcatttgcctctaaatacgcctccatccttgctgcccatatatgatagttttcacca |
285 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
6367935 |
caaaggaagaacttcgtagtcctcctcaagagcttcgcagaggtcatttgcctctaaatacgcctccattcctgctgcccatatatgatagttttcacca |
6368034 |
T |
|
| Q |
286 |
tcaaacacag |
295 |
Q |
| |
|
|||||||||| |
|
|
| T |
6368035 |
tcaaacacag |
6368044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 6367832 - 6367938
Alignment:
| Q |
1 |
ctaattctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatgatcataattctggtgaagatttcttctgagacag |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||| |||||||| |||| ||||||||||||||| || |
|
|
| T |
6367832 |
ctaattctttcatctccttcgtattcagttttgaggaaatttcatatttcaaatgctggtttgatggtcataattttggttaagatttcttctgagtcat |
6367931 |
T |
|
| Q |
101 |
cagcaaa |
107 |
Q |
| |
|
||||||| |
|
|
| T |
6367932 |
cagcaaa |
6367938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 33721693 - 33721950
Alignment:
| Q |
1 |
ctaattctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatgatcataattctggtgaagatttcttctgagacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33721693 |
ctaattctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatggtcataattctggtgaagatttcttctgagacag |
33721792 |
T |
|
| Q |
101 |
cagcaaacaaagtagcccttgcttttgactttcttgttttcctttccttgtgattttttatctgagctattgttggattgtctgacaaaggaagaacttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
33721793 |
cagcaaacaaagtagcccttgcttttgactttcttgttttcctttccttgtgatttgttatctgagccattgttggattgtctgacaaaggaagaacttc |
33721892 |
T |
|
| Q |
201 |
gtagtcctcctcaacagcttcccagaggtcatttgcctctaaatacgcctccatcctt |
258 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33721893 |
gtagtcctcctcaatagcttcccagaggtcatttgcctctaaatacgcctccatcctt |
33721950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 28698907 - 28699188
Alignment:
| Q |
1 |
ctaattctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatgatcataattctggtgaagatttcttctgagacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| |
|
|
| T |
28698907 |
ctaattctttcatctccttcatattcagttttgaggaaattccatatttcaaatgctgatttgatggttataattatggtgaagatttcttctgagacag |
28699006 |
T |
|
| Q |
101 |
cagcaaacaaagtagcccttgcttttgactttcttgttttcctttccttgtgattttttatctgagctattgttggattgtctgacaaaggaagaacttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28699007 |
cagcaaacaaagtagcccttgcttttgactttcttgttttcctttccttgtgattatttatctgagccattgttggattgtctgacaaaggaagaacttt |
28699106 |
T |
|
| Q |
201 |
gtagtcctcctcaacagcttcccagaggtcatttgcctctaaatacgcctccatccttgctgcccatatatgatagttttcaccatcaaacaca |
294 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28699107 |
gtagtcctcctcaacagcttcccaaaggtcatttgcctct------------attcttgctgcccatatatgatagttttcaccatcaaacaca |
28699188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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