View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19350_low_6 (Length: 269)
Name: NF19350_low_6
Description: NF19350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19350_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 7e-55; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 51530083 - 51530191
Alignment:
| Q |
13 |
aaaataaaaaccatagtattggtgacactcgtcgtgtctattacatttcaaagttctaaaatggaactatgttcctcaaaacagccatccacaacaacac |
112 |
Q |
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| T |
51530083 |
aaaataaaaaccatagtattggtgacactcgtcgtgtctattacatttcaaagttctaaaatggaactatgttcctcaaaacagccatccacaacaacac |
51530182 |
T |
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| Q |
113 |
tctcaataa |
121 |
Q |
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| T |
51530183 |
tctcaataa |
51530191 |
T |
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Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 51530253 - 51530339
Alignment:
| Q |
183 |
caataactttgttggttcatccctcagagtttctcccaccaaatttgccaactctgccaatgaagttaaaaccgttttacaaaaagt |
269 |
Q |
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| T |
51530253 |
caataactttgttggttcatccctcagagtttctcccaccaaattttccaactctgccaatgaagttaaaaccgttttacaaaaagt |
51530339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 51523802 - 51523884
Alignment:
| Q |
39 |
actcgtcgtgtctattacatttcaaagttctaaaatggaactatgttcctcaaaacagccatccacaacaacactctcaataa |
121 |
Q |
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| T |
51523802 |
actcatcgtgtctattatatttcaaagttctaaaatggaactatgttcctcaaaacagccatccacaacaacactctcaataa |
51523884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 51523949 - 51524035
Alignment:
| Q |
183 |
caataactttgttggttcatccctcagagtttctcccaccaaatttgccaactctgccaatgaagttaaaaccgttttacaaaaagt |
269 |
Q |
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|||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| | ||||||| ||||||||||||||||| |
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| T |
51523949 |
caatgactttgttggttcatccctcagagtttctaccgccaaatttgccaactctgctgaagaagttatcaccgttttacaaaaagt |
51524035 |
T |
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