View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19351_high_2 (Length: 498)

Name: NF19351_high_2
Description: NF19351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19351_high_2
NF19351_high_2
[»] chr1 (11 HSPs)
chr1 (13-472)||(25700997-25701459)
chr1 (81-133)||(16216427-16216478)
chr1 (13-124)||(9109284-9109396)
chr1 (20-124)||(25652276-25652380)
chr1 (50-151)||(38746617-38746716)
chr1 (28-121)||(12318404-12318497)
chr1 (81-121)||(13547023-13547064)
chr1 (81-121)||(13548934-13548975)
chr1 (67-124)||(41136010-41136066)
chr1 (37-121)||(10157818-10157901)
chr1 (81-124)||(29136438-29136482)
[»] chr3 (6 HSPs)
chr3 (28-124)||(5270563-5270659)
chr3 (25-124)||(50432522-50432619)
chr3 (43-124)||(1683664-1683746)
chr3 (29-124)||(20937848-20937943)
chr3 (46-124)||(49199364-49199442)
chr3 (28-105)||(35138583-35138659)
[»] chr5 (5 HSPs)
chr5 (27-124)||(8038390-8038486)
chr5 (34-122)||(316956-317044)
chr5 (46-121)||(10054714-10054789)
chr5 (42-121)||(33905919-33905998)
chr5 (49-118)||(4160796-4160864)
[»] chr8 (8 HSPs)
chr8 (28-124)||(11137217-11137313)
chr8 (28-124)||(3772382-3772477)
chr8 (46-121)||(7624846-7624919)
chr8 (13-120)||(10240318-10240425)
chr8 (81-121)||(40221938-40221979)
chr8 (85-124)||(2999740-2999780)
chr8 (20-123)||(9633488-9633590)
chr8 (46-121)||(11384178-11384253)
[»] chr7 (9 HSPs)
chr7 (28-124)||(5116797-5116893)
chr7 (28-125)||(43363349-43363447)
chr7 (60-133)||(14301374-14301446)
chr7 (46-121)||(8452099-8452173)
chr7 (59-125)||(22552498-22552563)
chr7 (81-124)||(22328323-22328367)
chr7 (27-124)||(8359197-8359293)
chr7 (28-124)||(1360054-1360150)
chr7 (28-124)||(29608927-29609023)
[»] chr4 (14 HSPs)
chr4 (29-105)||(41961609-41961684)
chr4 (46-121)||(6199766-6199842)
chr4 (46-124)||(3786153-3786231)
chr4 (20-110)||(6719761-6719850)
chr4 (28-121)||(12073586-12073678)
chr4 (85-123)||(40974970-40975008)
chr4 (28-123)||(33990037-33990131)
chr4 (46-124)||(12119735-12119813)
chr4 (66-124)||(33090071-33090129)
chr4 (196-308)||(7674200-7674313)
chr4 (81-121)||(27416899-27416940)
chr4 (49-124)||(32091632-32091706)
chr4 (46-121)||(26699341-26699416)
chr4 (46-121)||(55085341-55085416)
[»] chr2 (8 HSPs)
chr2 (46-136)||(16676408-16676498)
chr2 (47-124)||(30217945-30218022)
chr2 (30-121)||(42261368-42261457)
chr2 (20-124)||(28197084-28197186)
chr2 (79-119)||(36282852-36282892)
chr2 (81-119)||(7451314-7451353)
chr2 (46-123)||(34811121-34811197)
chr2 (81-121)||(45727122-45727161)
[»] scaffold0002 (1 HSPs)
scaffold0002 (30-121)||(490203-490292)
[»] chr6 (1 HSPs)
chr6 (30-88)||(11660831-11660888)
[»] scaffold0197 (1 HSPs)
scaffold0197 (46-121)||(1295-1370)


Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 13 - 472
Target Start/End: Original strand, 25700997 - 25701459
Alignment:
Q  13 aatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  25700997 aatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaaccgaaccaaaaaataacaagata 25701096  T
Q  113 aagagagtagagtatataaaataaacacagcaaggatttttct---agttcgacataatttgaccagcccaaataaaactctactaacacttttgacact 209  Q
    |||||||||||||||| |||||||||||||||||||||||||    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  25701097 aagagagtagagtatagaaaataaacacagcaaggatttttcatccagttcggcataatttgaccagcccaaataaaactctagtaacacttttgacact 25701196  T
Q  210 tggagtttgaacgatcccatcgatataaggctccatcttcaaacatcattcaggaaaacatggagcgtacgtcagaatcaaccttaagaatctatggatc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25701197 tggagtttgaacgatcccatcgatataaggctccatcttcaaacatcattcaggaaaacatggagcgtacgtcagaatcaaccttaagaatctatggatc 25701296  T
Q  310 tcgaaccgcaatacatttgttgttatcatcactcagatatatgtgtggaacttgaacttcaatatgagacatagttttattttcatgatcatcatggaag 409  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25701297 ttgaaccgcaatacatttgttgttatcatcactcagatatatgtgtggaacttgaacttcaatatgagacatagttttattttcatgatcatcatggaag 25701396  T
Q  410 gaattgttaaatagtctctccaactcatccaacttgttgatgggaactaaatacatcaccact 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25701397 gaattgttaaatagtctctccaactcatccaacttgttgatgggagctaaatacatcaccact 25701459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 16216427 - 16216478
Alignment:
Q  81 aaaccacaatcgaaccaaagaataacaagataaagagagtagagtatataaaa 133  Q
    ||||||||||||||| |||||||||| |||||||||| |||||||||||||||    
T  16216427 aaaccacaatcgaactaaagaataacgagataaagag-gtagagtatataaaa 16216478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 9109284 - 9109396
Alignment:
Q  13 aatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa--caaga 110  Q
    |||| ||||||||  |||||| || ||| | ||||||||||| || ||||||||||| | | |||||  |||||||||| |||||||||||||   ||||    
T  9109284 aataactaaaataaccacaagtaataacaacagatctagatctaagctagcaaccaactgtgaagca-taaccacaatcaaaccaaagaataaacaaaga 9109382  T
Q  111 taaagagagtagag 124  Q
    ||||||||||||||    
T  9109383 taaagagagtagag 9109396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 25652380 - 25652276
Alignment:
Q  20 aaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagaga 118  Q
    |||||| ||||||| |||||| | | || |||||| ||||||||||| |||| ||||||| ||||||||  | ||||||| ||| ||||| |||||||||    
T  25652380 aaaataatcacaagtaacaacaacaaatttagatctaatctagcaactaagtgtaaagca-aaaccacaggcaaaccaaataataaacaaaataaagaga 25652282  T
Q  119 gtagag 124  Q
    ||||||    
T  25652281 gtagag 25652276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 38746617 - 38746716
Alignment:
Q  50 agatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagagtatataaaataaacacagcaaggat 149  Q
    ||||| || ||||||| ||| | |||||| |||| |||||| ||| ||||||| |||||||||||||||||| |||||||| ||  |||||| |||||||    
T  38746617 agatctaaactagcaatcaactgtaaagc-caaatcacaattgaatcaaagaacaacaagataaagagagtatagtatatagaa-caacacaccaaggat 38746714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 12318404 - 12318497
Alignment:
Q  28 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagta 121  Q
    |||| |||||||| | ||||||||||  || ||||||||||| | ||||||| ||| || ||| |||||||||||| |||||||||||| |||||    
T  12318404 cacacgcaacaacaacagatctagatttaacctagcaaccaattgtaaagca-aaatcataattgaaccaaagaataaacaagataaagggagta 12318497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 13547023 - 13547064
Alignment:
Q  81 aaaccacaatcgaaccaaagaat-aacaagataaagagagta 121  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  13547023 aaaccacaatccaaccaaagaataaacaagataaagagagta 13547064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 13548934 - 13548975
Alignment:
Q  81 aaaccacaatcgaaccaaagaat-aacaagataaagagagta 121  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  13548934 aaaccacaatccaaccaaagaataaacaagataaagagagta 13548975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 41136066 - 41136010
Alignment:
Q  67 caagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagag 124  Q
    ||||| ||||||| ||| |||||  ||| |||||||||||||||||||||||||||||    
T  41136066 caagtgtaaagca-aaatcacaactgaatcaaagaataacaagataaagagagtagag 41136010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 10157901 - 10157818
Alignment:
Q  37 caacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagta 121  Q
    |||| ||||||||||||| ||| ||| || ||||| ||||| | | | |||||||||| ||||||| |||| |||||||||||||    
T  10157901 caacaatagatctagatcaaatttagaaatcaagtgtaaagta-atatcacaatcgaatcaaagaacaacaggataaagagagta 10157818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 29136482 - 29136438
Alignment:
Q  81 aaaccacaatcgaaccaaagaataa-caagataaagagagtagag 124  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||    
T  29136482 aaaccacaatctaaccaaaggataaacaagataaagagagtagag 29136438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 5270659 - 5270563
Alignment:
Q  28 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 124  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||| |||| ||||||||||||||||    
T  5270659 cacaagcaacaacaatagatctagatctaatctagcaaccaagtgtaatgca-aaaccacaatcgaaccaaagaataaacatgataaagagagtagag 5270563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 50432522 - 50432619
Alignment:
Q  25 agtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagag 124  Q
    |||||||||||||||  ||||||||||||| ||||||||||| ||||  |||||| ||||||||||| |||||||| | |||||||||||||||||||||    
T  50432522 agtcacaagcaacaataatagatctagatccaatctagcaacgaagtggaaagca-aaaccacaatcaaaccaaag-acaacaagataaagagagtagag 50432619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 124
Target Start/End: Complemental strand, 1683746 - 1683664
Alignment:
Q  43 tagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat--aacaagataaagagagtagag 124  Q
    |||||||||||| ||||||| |||| ||| ||||  | ||||||||||||||||||| ||   |||||||||||||||||||||    
T  1683746 tagatctagatctaatctagaaacctagtgtaaaata-aaaccacaatcgaaccaaaaaaataaacaagataaagagagtagag 1683664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 20937943 - 20937848
Alignment:
Q  29 acaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 124  Q
    ||||||| |||| | | ||||||||| ||||||  || ||||| ||||| | ||| ||||||||||||||| ||||| |||||||||||||||||||    
T  20937943 acaagcagcaacaacaaatctagatctaatctattaatcaagtgtaaagta-aaatcacaatcgaaccaaataataaacaagataaagagagtagag 20937848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 49199364 - 49199442
Alignment:
Q  46 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 124  Q
    ||||||||| ||||||| || |||||  | |||| ||||||||||| |||||||| |||| |||||||||||||||||||    
T  49199364 atctagatctaatctagaaaacaagtgcatagca-aaaccacaatctaaccaaaggataaacaagataaagagagtagag 49199442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 35138583 - 35138659
Alignment:
Q  28 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa 105  Q
    ||||||||||||| | | || |||||| ||||||||||  | || |||| || |||||||||||||||||||||||||    
T  35138583 cacaagcaacaacaacatatttagatccaatctagcaattaggtgtaaaaca-aaaccacaatcgaaccaaagaataa 35138659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 8038486 - 8038390
Alignment:
Q  27 tcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagag 124  Q
    |||||| ||||||| |||||||| |||| |||||||||||||||| ||||| | ||||||||||||||||||| ||||| ||||||||||||||||||    
T  8038486 tcacaatcaacaacaatagatcttgatctaatctagcaaccaagtgtaaagaa-aaaccacaatcgaaccaaaaaataataagataaagagagtagag 8038390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 317044 - 316956
Alignment:
Q  34 caacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtag 122  Q
    ||||||||| |||||||||||  ||||||||||||||| ||||||| |||||||||| |||||||||||| ||||| |||||||||||||    
T  317044 caacaacgacagatctagatcttatctagcaaccaagtgtaaagca-aaaccacaattgaaccaaagaataaacaaaataaagagagtag 316956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 10054714 - 10054789
Alignment:
Q  46 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagta 121  Q
    ||||||||| |||||||||||||||| ||||||| |||  ||||||||| |||| ||| ||||||||||| ||||||    
T  10054714 atctagatctaatctagcaaccaagtgtaaagca-aaattacaatcgaagcaaaaaataaacaagataaaaagagta 10054789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 33905919 - 33905998
Alignment:
Q  42 atagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 121  Q
    ||||||| ||||  |||||||||| ||||| ||||| | |||||||| ||||||||| |||||| ||||||||||||||||    
T  33905919 atagatcaagatttaatctagcaatcaagtgtaaagta-aaaccacattcgaaccaatgaataaacaagataaagagagta 33905998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 4160864 - 4160796
Alignment:
Q  49 tagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagaga 118  Q
    |||||| |||||| ||||||||| ||||||| |||||| |||||||||||||||| |||||||||| ||||    
T  4160864 tagatctaatcta-caaccaagtgtaaagca-aaaccataatcgaaccaaagaataaacaagataatgaga 4160796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 11137313 - 11137217
Alignment:
Q  28 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 124  Q
    ||||||||||||  | | ||||| ||| |||||||||| ||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||||    
T  11137313 cacaagcaacaataacatatctaaatctaatctagcaatcaagtataaag-aaaaaccacaatcgaaccaatgaataaacaagataaagagagtagag 11137217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 3772477 - 3772382
Alignment:
Q  28 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 124  Q
    ||||||||||||| | | ||||||||  ||||||| || |||||  | |||| ||||||||||| ||||||||||||| |||||||||||||||||||    
T  3772477 cacaagcaacaacaaca-atctagatttaatctagaaatcaagtgcatagca-aaaccacaatctaaccaaagaataaacaagataaagagagtagag 3772382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 7624846 - 7624919
Alignment:
Q  46 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagta 121  Q
    ||||||||| || |||||||||| || ||||| | |||||||||||||||||||||| || |||| ||||||||||    
T  7624846 atctagatctaa-ctagcaaccatgtgtaaagta-aaaccacaatcgaaccaaagaacaataagacaaagagagta 7624919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 10240425 - 10240318
Alignment:
Q  13 aatatctaaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaa--taacaaga 110  Q
    |||| ||||||||| ||||| ||| ||| | | ||||||||| ||||||| ||| || | ||||||| ||||||||||||||||||| ||   |||||||    
T  10240425 aataactaaaatagccacaaacaataacaaca-atctagatctaatctagaaacgaaatgtaaagca-aaaccacaatcgaaccaaaaaaataaacaaga 10240328  T
Q  111 taaagagagt 120  Q
    ||||||||||    
T  10240327 taaagagagt 10240318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 40221979 - 40221938
Alignment:
Q  81 aaaccacaatcgaaccaaagaat-aacaagataaagagagta 121  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  40221979 aaaccacaatccaaccaaagaatgaacaagataaagagagta 40221938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 2999740 - 2999780
Alignment:
Q  85 cacaatcgaaccaaagaataa-caagataaagagagtagag 124  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  2999740 cacaatctaaccaaagaataaacaagataaagagagtagag 2999780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 9633488 - 9633590
Alignment:
Q  20 aaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagaga 118  Q
    |||||| ||||||||||||| || | ||||||||| ||| || ||| ||| | ||||  | ||| |||||| |||||||||||||| |||||||||||||    
T  9633488 aaaataatcacaagcaacaa-gacaaatctagatctaatataacaatcaattgtaaaata-aaatcacaattgaaccaaagaataaacaagataaagaga 9633585  T
Q  119 gtaga 123  Q
    |||||    
T  9633586 gtaga 9633590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 11384253 - 11384178
Alignment:
Q  46 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 121  Q
    ||||||||| ||||||| || |||||  | |||| ||||||||||| |||||||| |||| ||||||||||||||||    
T  11384253 atctagatctaatctagaaaacaagtgcatagca-aaaccacaatctaaccaaaggataaacaagataaagagagta 11384178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 5116893 - 5116797
Alignment:
Q  28 cacaagcaacaacgatagatctagatc-gaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagag 124  Q
    ||||||||||||| ||| ||||||||| |||||| | |||||||| ||||||| || |||||||||||||| | ||||||||||||||||| ||||||    
T  5116893 cacaagcaacaacaatatatctagatctgaatctcgtaaccaagtgtaaagca-aatccacaatcgaaccatataataacaagataaagagggtagag 5116797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 43363349 - 43363447
Alignment:
Q  28 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaa-taacaagataaagagagtagagt 125  Q
    ||||||||||||  | | ||||||||| |||||| |||| |  |  |||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  43363349 cacaagcaacaataacaaatctagatctaatctaacaactatttgcaaagcacaaaccacaatcgaaccaaagaacaaacaagataaagagagtagagt 43363447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 14301374 - 14301446
Alignment:
Q  60 tagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagagtatataaaa 133  Q
    ||||||| |||| | ||||| ||| ||||||| || ||||||||||||||||||||||||||||||||| ||||    
T  14301374 tagcaactaagtgtcaagca-aaatcacaatcaaatcaaagaataacaagataaagagagtagagtatagaaaa 14301446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 8452099 - 8452173
Alignment:
Q  46 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagta 121  Q
    ||||||||| ||||||  || ||| | ||||||| ||||||||||||||||||||||| |||||||||| ||||||    
T  8452099 atctagatctaatctaaaaatcaaatgtaaagca-aaaccacaatcgaaccaaagaatgacaagataaaaagagta 8452173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 22552498 - 22552563
Alignment:
Q  59 ctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtagagt 125  Q
    ||||||||||||| ||||| | ||||| | |||| ||||||||| ||||||||||||||||||||||    
T  22552498 ctagcaaccaagtgtaaagaa-aaacctcgatcgtaccaaagaacaacaagataaagagagtagagt 22552563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 22328323 - 22328367
Alignment:
Q  81 aaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 124  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||    
T  22328323 aaaccacaatcgaacaaaagaataaacaagataaagagagtagag 22328367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 8359197 - 8359293
Alignment:
Q  27 tcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 124  Q
    |||||||||||||| | | ||||||||| ||||||| || |||||  | |||| ||||||||||| |||||||| || |||||||||| ||||||||||    
T  8359197 tcacaagcaacaacaaca-atctagatctaatctagaaaacaagtgcatagca-aaaccacaatctaaccaaaggataaacaagataatgagagtagag 8359293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 1360054 - 1360150
Alignment:
Q  28 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaa-taacaagataaagagagtagag 124  Q
    ||||||||||||| | |  | |||||| ||||||  ||| |||| ||||||| ||||||||||||||| ||||||  ||||||||||||||| |||||    
T  1360054 cacaagcaacaacaacaattttagatctaatctaaaaactaagtgtaaagca-aaaccacaatcgaacaaaagaagaaacaagataaagagaatagag 1360150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 29609023 - 29608927
Alignment:
Q  28 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 124  Q
    ||||||||||||| | | ||||||||| ||| ||| ||||||||  | | || ||||||||||| || ||||| |||| |||||||||||||||||||    
T  29609023 cacaagcaacaacaaca-atctagatctaatatagaaaccaagtgcatatcaaaaaccacaatctaagcaaaggataaacaagataaagagagtagag 29608927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 41961684 - 41961609
Alignment:
Q  29 acaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa 105  Q
    |||||||||||| ||||||||||||| ||||||| ||||| || ||||||| ||||||||||| |||||||||||||    
T  41961684 acaagcaacaacaatagatctagatctaatctagtaaccaggtttaaagca-aaaccacaatcaaaccaaagaataa 41961609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 6199766 - 6199842
Alignment:
Q  46 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaa-taacaagataaagagagta 121  Q
    ||||||||| |||||| |||| || |  |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  6199766 atctagatctaatctaacaactaattgcaaagcacaaaccacaatcgaaccaaagaacaaacaagataaagagagta 6199842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 3786231 - 3786153
Alignment:
Q  46 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 124  Q
    ||||||||| ||| |||||||||||| |||| || |||  |||||||||||||||||| |||||||||||||||||||||    
T  3786231 atctagatctaatatagcaaccaagtgtaaaaca-aaattacaatcgaaccaaagaatgaacaagataaagagagtagag 3786153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 6719850 - 6719761
Alignment:
Q  20 aaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaaga 110  Q
    |||| ||||||| |||| ||| | ||||||||||| ||||||| ||||||||  |||||| ||||||||||  |||||||||| |||||||    
T  6719850 aaaacagtcacaggcaaaaacaacagatctagatctaatctagaaaccaagtgcaaagca-aaaccacaataaaaccaaagaacaacaaga 6719761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 12073678 - 12073586
Alignment:
Q  28 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagta 121  Q
    ||||||||||||| | | ||||||||| ||||||| ||||||||  | | || ||||||||||| ||||||||||| ||||||||||||||||||    
T  12073678 cacaagcaacaacaaca-atctagatctaatctagaaaccaagtgcataaca-aaaccacaatctaaccaaagaataaacaagataaagagagta 12073586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 40974970 - 40975008
Alignment:
Q  85 cacaatcgaaccaaagaataacaagataaagagagtaga 123  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  40974970 cacaatcgaaccaaagaacaacaagataaagagagtaga 40975008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 33990131 - 33990037
Alignment:
Q  28 cacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtaga 123  Q
    ||||||||||||| | | ||||||||| ||||||| ||||||||  | |||| || ||| ||| |||||||||||||| ||||||||||||||||||    
T  33990131 cacaagcaacaacaaca-atctagatctaatctagaaaccaagtgcatagca-aatccagaattgaaccaaagaataaacaagataaagagagtaga 33990037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 12119813 - 12119735
Alignment:
Q  46 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 124  Q
    ||||||||| ||||||| ||| ||||  | |||| |||||||||||| |||||||| ||| |||||||||||||||||||    
T  12119813 atctagatctaatctagaaactaagtgcatagca-aaaccacaatcggaccaaagactaaacaagataaagagagtagag 12119735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 33090129 - 33090071
Alignment:
Q  66 ccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagtagag 124  Q
    |||||| ||||||| ||||||||||||||||||| ||| |||||||||||||||| ||||    
T  33090129 ccaagtgtaaagca-aaaccacaatcgaaccaaaaaataaacaagataaagagagcagag 33090071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 308
Target Start/End: Complemental strand, 7674313 - 7674200
Alignment:
Q  196 acacttttgacacttggagtttgaacgatcccatcgatataaggctccatcttcaaacatcattc-aggaaaacatggagcgtacgtcagaatcaacctt 294  Q
    |||||||||||||||| ||||||| |||  ||||  ||||||  ||||||||||| | | ||| | || |||||||| || ||  |||| ||||| ||||    
T  7674313 acacttttgacacttgcagtttgatcgaatccataaatataacactccatcttcagaaaccatccaagaaaaacatgaagtgtgtgtcaaaatcatcctt 7674214  T
Q  295 aagaatctatggat 308  Q
    ||||||||||||||    
T  7674213 aagaatctatggat 7674200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 27416899 - 27416940
Alignment:
Q  81 aaaccacaatcgaaccaaagaat-aacaagataaagagagta 121  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  27416899 aaaccacaatccaaccaaagaataaacaagataaagagagta 27416940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 32091706 - 32091632
Alignment:
Q  49 tagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 124  Q
    |||||| |||||||||| ||||| ||||| |  ||||||||| |||| ||||||||| |||||||||||| ||||||    
T  32091706 tagatctaatctagcaaacaagtgtaaagaa--aaccacaattgaactaaagaataaacaagataaagagcgtagag 32091632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 26699341 - 26699416
Alignment:
Q  46 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 121  Q
    ||||||||| ||||||| | ||||||  | |||| |||||| ||| |||||||||||||| ||||||||||||||||    
T  26699341 atctagatctaatctagaatccaagtgcatagca-aaaccataattgaaccaaagaataaacaagataaagagagta 26699416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 55085341 - 55085416
Alignment:
Q  46 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 121  Q
    ||||||||| ||| ||| ||||||||  | |||| ||||||||||| |||||| |||||| ||||||||||||||||    
T  55085341 atctagatctaatttagaaaccaagtgcatagca-aaaccacaatccaaccaaggaataaacaagataaagagagta 55085416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 16676498 - 16676408
Alignment:
Q  46 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaa-taacaagataaagagagtagagtatataaaataa 136  Q
    ||||||||| ||||||||||| |||| |||| || ||||||||||||||||||||||  ||| ||||||||| ||||||||||||| |||||    
T  16676498 atctagatctaatctagcaacaaagtgtaaatca-aaaccacaatcgaaccaaagaacaaactagataaagaaagtagagtatatagaataa 16676408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 30217945 - 30218022
Alignment:
Q  47 tctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagtagag 124  Q
    |||||||| ||||||| |||||||| |||| ||||| |||||||| ||||||||||||| |||||||||||||||||||    
T  30217945 tctagatccaatctagaaaccaagtgtaaaacacaa-ccacaatcaaaccaaagaataaacaagataaagagagtagag 30218022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 42261368 - 42261457
Alignment:
Q  30 caagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 121  Q
    ||||||||||| ||| ||||||||| |||||||||||||||| || |||| ||||||||| | ||||||  ||||| ||||||||||||||||    
T  42261368 caagcaacaacaatatatctagatctaatctagcaaccaagtgtatagca-aaaccacaaacaaaccaa--aataatcaagataaagagagta 42261457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 28197186 - 28197084
Alignment:
Q  20 aaaatagtcacaagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagag 119  Q
    ||||||||||||||||||||||  | ||||||||   ||||||||||||||| ||||||| || | ||||| ||| ||||||| |||| ||| |||||||    
T  28197186 aaaatagtcacaagcaacaacggcatatctagattttatctagcaaccaagtgtaaagca-aaccaacaattgaatcaaagaacaacatgat-aagagag 28197089  T
Q  120 tagag 124  Q
    |||||    
T  28197088 tagag 28197084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 36282852 - 36282892
Alignment:
Q  79 acaaaccacaatcgaaccaaagaataacaagataaagagag 119  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  36282852 acaaagcacaatcgaatcaaagaataacaagataaagagag 36282892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 119
Target Start/End: Complemental strand, 7451353 - 7451314
Alignment:
Q  81 aaaccacaatcgaaccaaagaat-aacaagataaagagag 119  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  7451353 aaaccacaatcgaaccaaagaataaacaagataaagagag 7451314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 34811121 - 34811197
Alignment:
Q  46 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataacaagataaagagagtaga 123  Q
    ||||||||| ||||||||||| || | ||||| | |||| |||| ||||  |||||| ||||||||||||||||||||    
T  34811121 atctagatctaatctagcaactaattgtaaagta-aaactacaaccgaataaaagaacaacaagataaagagagtaga 34811197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 45727161 - 45727122
Alignment:
Q  81 aaaccacaatcgaaccaaagaataacaagataaagagagta 121  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
T  45727161 aaaccacaatccaaccaaagaataa-aagataaagagagta 45727122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 490203 - 490292
Alignment:
Q  30 caagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaataa-caagataaagagagta 121  Q
    ||||||||||| ||| ||||||||| |||||||||||||||| || |||| ||||||||| | ||||||  ||||| ||||||||||||||||    
T  490203 caagcaacaacaatatatctagatctaatctagcaaccaagtgtatagca-aaaccacaaacaaaccaa--aataatcaagataaagagagta 490292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 11660888 - 11660831
Alignment:
Q  30 caagcaacaacgatagatctagatcgaatctagcaaccaagtataaagcacaaaccaca 88  Q
    ||||||||||| | ||||||||||| |||||||||||||||| ||||||| ||||||||    
T  11660888 caagcaacaacaacagatctagatctaatctagcaaccaagtgtaaagca-aaaccaca 11660831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 1295 - 1370
Alignment:
Q  46 atctagatcgaatctagcaaccaagtataaagcacaaaccacaatcgaaccaaagaat-aacaagataaagagagta 121  Q
    ||||||||| ||||||| |||||||| ||||| | ||||||||||| ||||||| ||| || |||||||||||||||    
T  1295 atctagatctaatctagaaaccaagtgtaaagta-aaaccacaatcaaaccaaaaaataaataagataaagagagta 1370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University