View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19351_low_1 (Length: 735)
Name: NF19351_low_1
Description: NF19351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19351_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 371 - 718
Target Start/End: Complemental strand, 53089765 - 53089402
Alignment:
| Q |
371 |
aaaaacattttgggcatcttagagattaataaggattatctgacagtctaatttcctcatgatcacttgtttatggtttaaaatttacacttccacacat |
470 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53089765 |
aaaatcattttgggcatcttagagattaattaggattatctgacggtctaatttcctcatgatcacttgtttatggtttaaaatttacacttccacacat |
53089666 |
T |
|
| Q |
471 |
gattaatagtttattgttgttcgtct----------------atagattcacaatggagcaaatgaaaatggggttgatcagtcttcaagggttgaaaac |
554 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53089665 |
gattaataatttattgttgttcgtctccatgtcttctaatatatagattcacaatggagcaaatgaaaatggggttgatcagtcttcaagggttgaaaac |
53089566 |
T |
|
| Q |
555 |
gttacagctgagctggaggaaacacgagaaaatctagagaaagctaaagaagaaagcatgttgatggcacattgtatgtcatctcttcaggaagaactcg |
654 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53089565 |
gttacagctgagctggaggagacacgagaaaatctagagaaagctaaagaagaaagcatgttgatggcacattgtatgtcatctcttcaggaagaactcg |
53089466 |
T |
|
| Q |
655 |
aacgcacgaagcaagagctcgaacaattgaagcaacgtgaaactgaaaaacatcaagtggaatc |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53089465 |
aacgcacgaagcaagagctcgaacaattgaagcaacgtgaaactgaaaaacatcaagtggaatc |
53089402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 53090257 - 53090045
Alignment:
| Q |
14 |
atatataagtaaattcatttgtgttttcaatatagcgtgacaagagaaatgctagcaacacacattgttggaaaatgtatgttagaatgtgtgttgataa |
113 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||| | |||||||||| |||||||||||| |
|
|
| T |
53090257 |
atatataagtaaattcatttgtgctttcaatatagtgtgacaagagaaatgctagcaacacacattattgaaaagtatatgttagaacgtgtgttgataa |
53090158 |
T |
|
| Q |
114 |
catttctca-------gtttgacaatatgatgcgacatgagtgatagatatactcaaatgggtgttgct--atatctcccaataaaatatatagcgaatg |
204 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
53090157 |
catttctcatttctcagtttaacaatatgatgcgacatgagtgatagatatactcaaatgggtgttgctatatatctcccaataaaatatatagcgaatg |
53090058 |
T |
|
| Q |
205 |
attcatgaatgta |
217 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
53090057 |
attcacgaatgta |
53090045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 222 - 378
Target Start/End: Complemental strand, 53089964 - 53089819
Alignment:
| Q |
222 |
cgtattgtgaaacttcgtgaacccacttctcgctatataaagcattttcctactcaaattctatggtgcgacatgaatgatagatatactcaaattatta |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53089964 |
cgtattgtgaaacttcgtgaacccacttctcgctatataaagcattttcctactcaaattctc-----------gaatgatagatatactcaaattatta |
53089876 |
T |
|
| Q |
322 |
atcatttggtcagaaaaattaattattgacccgtaggtatgtaaaaagtaaaaacat |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53089875 |
atcatttggtcagaaaaattaattattgacccgtaggtatgtaaaaagtaaaaacat |
53089819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University