View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19351_low_6 (Length: 227)
Name: NF19351_low_6
Description: NF19351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19351_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 34093529 - 34093740
Alignment:
| Q |
1 |
aatggaccttaccttgtattggattttatttttaaacataccttgtattgaattattactactattataattgattaattaattaaaaagtaataatgaa |
100 |
Q |
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| T |
34093529 |
aatggaccttaccttgtattggatttt-tttttaaacataccttgtattgaattattactactattataattgattaattaattaaaaagtaataatgaa |
34093627 |
T |
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| Q |
101 |
atttagtacccacttaattttcttaaatagtgtaaatacagtaaaaattctaaggagagtgaattttcatccatataatagaaaattaaacaactaaaaa |
200 |
Q |
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| T |
34093628 |
atttagtacccacttaattttcttaaatagtgtaaatacagtaaaaattctaaggagagtgaattttcatccatataatagcaaatt-aacaacgaaaaa |
34093726 |
T |
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| Q |
201 |
gtagaaacaagtaa |
214 |
Q |
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| T |
34093727 |
gtagaaacaagtaa |
34093740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 8461348 - 8461191
Alignment:
| Q |
61 |
actattataattgattaattaattaaaaagtaataatgaaatttagtaccc-----acttaattttcttaaatagtgtaaatacagtaaaaatt--ctaa |
153 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||| ||| |
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| T |
8461348 |
actattataattgattaattaattaaacaataataatgaaatttagtacccatttaatttaattttcttaaatagtgtaaacacagtaaaaattacataa |
8461249 |
T |
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| Q |
154 |
ggagagtgaattttcatccatataatagaaaattaaacaactaaaaagtagaaacaagt |
212 |
Q |
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| T |
8461248 |
ggagagtggatttccatccatatagcagcaaatt-aacaactgaaaagtagaaacaagt |
8461191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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