View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19352_high_3 (Length: 379)
Name: NF19352_high_3
Description: NF19352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19352_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 164055 - 164403
Alignment:
| Q |
18 |
aatatcagtagtggatagagattcaacagacatggctgagagtgttcaaaaaatatggatcaagttcgttgttatgcaaaagctcatgataccataaaaa |
117 |
Q |
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| T |
164055 |
aatatcagtagtggatagagattcaacagacatggctgagagtgttcaaaaaatatggatcaagttcgttgttatgcaaaagctcatgataccataaaaa |
164154 |
T |
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| Q |
118 |
gggttagaaatgaactattgagttgcattagaatgaaagaacgctttatataaatagcactgtcagttactgcaatgttaggaacaaatacatacaagta |
217 |
Q |
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| T |
164155 |
gggttagaaatgaactattgagttgcattagaatgaaagaacgctttatataaatagcactgtcagttactgcaatgttaggaacaaatacatacaagta |
164254 |
T |
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| Q |
218 |
ggaacataacgaatctccatgataacagttaaagaattctaattataaaccataatagaaagcttataactagtgatagtcatgcgatgttatccaatac |
317 |
Q |
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| T |
164255 |
ggaacataacgaatctccatgataacagttaaagaattctaattataaaccataatagaaagcttataactagtgatagtcatgcgatattatccaatac |
164354 |
T |
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| Q |
318 |
aatatacatgtgaaatgaatcgagagtttattctatctgattttcacct |
366 |
Q |
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| T |
164355 |
aatatacatgtgaaatgaatcgagagtttattctatctgattttcacct |
164403 |
T |
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