View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19352_high_4 (Length: 369)
Name: NF19352_high_4
Description: NF19352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19352_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 42054806 - 42055154
Alignment:
| Q |
16 |
catactctaatttaagttttactaagatggttttctaagtgaatattgagaatattataattaaaccccatgtgtctacataaaaacctatgcactaatc |
115 |
Q |
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| T |
42054806 |
catactctaatttaagttttactaagatggttttctaagagaatattgagaatattataattaaaccccatgtgtctatataaaaacctatgcactaatc |
42054905 |
T |
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| Q |
116 |
annnnnnnnnnnnnnnnggttctatgcactaataaagagaacatgaaaactcttagcaaagaaaaatatgaaaattcagtcctaagtccaaacatcataa |
215 |
Q |
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| T |
42054906 |
atttcttttttctttttggttctatgcactaataaagagaacatgaaaagtcttagcaaagaaaaatatgaaaattcagtcctaagtccaaacatcataa |
42055005 |
T |
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| Q |
216 |
taaaaacattaaaaatgagattatgctaataaattccagtcttaagattggaaactaaaacaacgaacgttttattttttctaataaattcctaacatta |
315 |
Q |
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| T |
42055006 |
taaaaacattaaaaatgagattatgctaataaattccagtcttaagattggaaactaaaacaacgaacgttttattttttctaataaattcctaacatta |
42055105 |
T |
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| Q |
316 |
tatgcatgattgcctatctctaactccatggtgattcccctttgctact |
364 |
Q |
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| T |
42055106 |
tatgcatgattgcctatctctacctccatggtgattccccttttctact |
42055154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 25991626 - 25991701
Alignment:
| Q |
243 |
aataaattccagtcttaagattggaaactaaaacaacgaacgttttattttttctaataaattcctaacattatat |
318 |
Q |
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| T |
25991626 |
aataaattccaatcataagattggaaactaaaacaatgaatgttttattttttctaataaattcctgatattatat |
25991701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 25991504 - 25991571
Alignment:
| Q |
133 |
ggttctatgcactaataaagagaacatgaaaactcttagcaaagaaaaatatgaaaattcagtcctaa |
200 |
Q |
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| T |
25991504 |
ggttctacgcactaatcaagcgaacatgaaaagtcttgacaaagaaaaatatgaaaattcagtcctaa |
25991571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 25990360 - 25990419
Alignment:
| Q |
42 |
atggttttctaagtgaatattgagaatattataattaaaccccatgtgtctacataaaaa |
101 |
Q |
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| T |
25990360 |
atggttttctaagacaatattgagaatactataattaaacctcatgtctctacataaaaa |
25990419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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