View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19352_high_5 (Length: 349)
Name: NF19352_high_5
Description: NF19352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19352_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 43664371 - 43664058
Alignment:
| Q |
18 |
cttatataccatattctagtttaatcctttatgataaaatatgtaaaagatactatccaatgtttgaggttctattttatttacagtgattgaatttaat |
117 |
Q |
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| T |
43664371 |
cttatataccatattctagtttaatcctt-ataataatatatgtaaaagatactatccaatgtttgaggttctattttatttacagtgattgaatttaat |
43664273 |
T |
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| Q |
118 |
tcattcacttttgagttgcaatttcctgacagcagtttagctttctcgtgatgctctttcttttgaagtccaaaatctgt----------ttcttcaatt |
207 |
Q |
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| T |
43664272 |
tcattcacttttgagttgcaatttcctgacagcagtttagctttctcgtgatgttctttgttttgaagtcc-aaatctgtttctttaatgttcttcaatt |
43664174 |
T |
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| Q |
208 |
attatccatttctttcctaaagagagaatagttactaaaagtgcttaaaatttacaaagcaaaaagtcaagaaactttatgcaatgcaagttaaactaac |
307 |
Q |
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| T |
43664173 |
attattcatttctttcctaaagagagaatagttactaaaagtgcttaaaatt----------aaagtcaagaaactttatgcaatgcaagttaaactaac |
43664084 |
T |
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| Q |
308 |
actaatcttgtgttattatttgttca |
333 |
Q |
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| T |
43664083 |
actaatcttgtgttattatttgttca |
43664058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 197 - 333
Target Start/End: Original strand, 24559738 - 24559874
Alignment:
| Q |
197 |
tttcttcaattattatccatttctttcctaaagagagaatagttactaaaagtgcttaaaatttacaaagcaaaaagtcaagaaactttatgcaatgcaa |
296 |
Q |
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| T |
24559738 |
tttcttcaattattattcatttctttcctaaagagagaatagttactaaaagtgcttaaaatttacaaagcaaaaagtcaagaaactttatacaatgcaa |
24559837 |
T |
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| Q |
297 |
gttaaactaacactaatcttgtgttattatttgttca |
333 |
Q |
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| T |
24559838 |
gttaaactaacactaatcttgtgttattatttgttca |
24559874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 51815328 - 51815461
Alignment:
| Q |
18 |
cttatataccatattctagtttaatcctttatgataaaatatgtaaaagatactatccaatgtttgaggttctattttatttacagtgattgaatttaat |
117 |
Q |
| |
|
||||||||||||||| |||| |||||||| || ||||||||| ||||||||||||||||||||||||||| || || || |||| |||||||||||| | |
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| T |
51815328 |
cttatataccatattttagtctaatcctt-ataataaaatatataaaagatactatccaatgtttgaggtcatacttcatgtacaatgattgaatttatt |
51815426 |
T |
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| Q |
118 |
tcattcacttttgagttgcaatttcctgacagcag |
152 |
Q |
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| T |
51815427 |
tcattcacttttgagttgcaatttcctgacagcag |
51815461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 51815510 - 51815564
Alignment:
| Q |
197 |
tttcttcaattattatccatttctttcctaaagagagaatagttactaaaagtgc |
251 |
Q |
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||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
51815510 |
tttcttcaactattatccatttctttcctaaagagagaagagttaataaaagtgc |
51815564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 19138577 - 19138512
Alignment:
| Q |
226 |
aaagagagaatagttactaaaagtgcttaaaatttacaaagcaaaaagtcaagaaactttatgcaa |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
19138577 |
aaagagagaatagttactaaaagtgcttaaaatttacaaagcaaaaagtaaagtaactttatgcaa |
19138512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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