View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19352_low_1 (Length: 473)

Name: NF19352_low_1
Description: NF19352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19352_low_1
NF19352_low_1
[»] chr4 (7 HSPs)
chr4 (10-454)||(45738574-45739019)
chr4 (115-269)||(45733334-45733488)
chr4 (388-454)||(45733104-45733170)
chr4 (300-375)||(35723391-35723467)
chr4 (315-366)||(20521871-20521922)
chr4 (315-365)||(12077815-12077865)
chr4 (317-365)||(20743302-20743350)
[»] chr7 (2 HSPs)
chr7 (300-366)||(32308106-32308172)
chr7 (300-366)||(22868028-22868094)
[»] chr1 (4 HSPs)
chr1 (301-366)||(6427336-6427401)
chr1 (317-366)||(2896145-2896194)
chr1 (317-366)||(36878447-36878496)
chr1 (318-366)||(9709806-9709854)
[»] chr8 (2 HSPs)
chr8 (300-360)||(31236584-31236644)
chr8 (319-371)||(13844622-13844674)
[»] chr2 (2 HSPs)
chr2 (315-363)||(18420456-18420504)
chr2 (317-365)||(21782842-21782890)
[»] chr6 (5 HSPs)
chr6 (300-366)||(7265600-7265666)
chr6 (298-363)||(19040341-19040406)
chr6 (315-348)||(32299279-32299312)
chr6 (300-344)||(9617442-9617486)
chr6 (300-344)||(30866151-30866195)
[»] chr5 (2 HSPs)
chr5 (317-375)||(28588698-28588756)
chr5 (315-371)||(31084304-31084360)
[»] scaffold0085 (1 HSPs)
scaffold0085 (300-344)||(26401-26445)
[»] chr3 (1 HSPs)
chr3 (315-359)||(13807162-13807206)


Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 10 - 454
Target Start/End: Complemental strand, 45739019 - 45738574
Alignment:
Q  10 acatcatcatcgaaaattgagtgagagagttgcgtgaatcagaaatcagnnnnnnn-gcaactcatgggttgggcaatagctttacacggcggcgccggc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  45739019 acatcatcatcgaaaattgagtgagagagttgcgtgaatcagaaatcagaaaaaaaagcaactcatgggttgggcaatagctttacacggcggcgccggc 45738920  T
Q  109 gacataccatattcacttccactggaacgccgtcaaccacgcgaagaagctctccgtcactgcctccaaatcggtgtcaaagctctcaaatccaacatgg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45738919 gacataccatattcacttccactggaacgccgtcaaccacgcgaagaagctctccgtcactgcctccaaatcggtgtcaaagctctcaaatccaacatgg 45738820  T
Q  209 cacctctagacgtcgttgagcttgttgtatgtattcatcattcacactatttatcactttcaaagcacgaacactcttcaaattagacgcagacacatac 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45738819 cacctctagacgtcgttgagcttgttgtatgtattcatcattcacactatttatcactttcaaagcacgaacactcttcaaattagacgcagacacatac 45738720  T
Q  309 aatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtcatgtcgtgttgtgtatgcatccatgtttcatagctttcttct 408  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45738719 aatgaaattgaattatatgattttctcatattattatcagtctaggcgtgtcagtgtcatgtcgtgttgtgtatgcatccatgtttcatagctttcttct 45738620  T
Q  409 gttttgaatgtgattctgataataatcattgatcataggttcgtga 454  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||    
T  45738619 gttttgaatgtgattcttataataatcattgttcataggttcgtga 45738574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 115 - 269
Target Start/End: Complemental strand, 45733488 - 45733334
Alignment:
Q  115 ccatattcacttccactggaacgccgtcaaccacgcgaagaagctctccgtcactgcctccaaatcggtgtcaaagctctcaaatccaacatggcacctc 214  Q
    |||| ||||||||||| ||||  |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||    
T  45733488 ccattttcacttccaccggaagcccgtcagccacgcgaagaagctctccgtcactgcctccaaattggtgtcaaagctctcaaatccaacatgtcccctc 45733389  T
Q  215 tagacgtcgttgagcttgttgtatgtattcatcattcacactatttatcactttc 269  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  45733388 tagacgtcgttgagcttgttgtatgtattcatcactcacaatatttatcactttc 45733334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 388 - 454
Target Start/End: Complemental strand, 45733170 - 45733104
Alignment:
Q  388 catgtttcatagctttcttctgttttgaatgtgattctgataataatcattgatcataggttcgtga 454  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45733170 catgtttcatagctttcttctgttttgaatgtgattcttataataatcattgatcataggttcgtga 45733104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 375
Target Start/End: Original strand, 35723391 - 35723467
Alignment:
Q  300 gacacatacaatgaaattgaattatgtg-attttctcatattattatcagtctaggcgtgtcagtgtcatgtcgtgt 375  Q
    |||||||| ||| | ||||||||||||| ||||||||| ||||||| | || | |||||||||||||||||||||||    
T  35723391 gacacatataattacattgaattatgtgtattttctcaaattattagcggtgtcggcgtgtcagtgtcatgtcgtgt 35723467  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 366
Target Start/End: Original strand, 20521871 - 20521922
Alignment:
Q  315 attgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 366  Q
    |||||||||||||||||| ||| ||||||||| || | ||||||||||||||    
T  20521871 attgaattatgtgattttatcaaattattatcggtatcggcgtgtcagtgtc 20521922  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 12077865 - 12077815
Alignment:
Q  315 attgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgt 365  Q
    |||||||||||||||||||||| ||||||| |||| | | |||||||||||    
T  12077865 attgaattatgtgattttctcaaattattaacagtattgacgtgtcagtgt 12077815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 20743302 - 20743350
Alignment:
Q  317 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgt 365  Q
    |||||||||| ||||||||| ||||||||| || | |||||||||||||    
T  20743302 tgaattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgt 20743350  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 32308172 - 32308106
Alignment:
Q  300 gacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 366  Q
    |||||||||||| | | |||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  32308172 gacacatacaattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 32308106  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 22868094 - 22868028
Alignment:
Q  300 gacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 366  Q
    |||||||| ||| | | ||||||||||||||||||||||||||||   || | ||||||||||||||    
T  22868094 gacacatataattacactgaattatgtgattttctcatattattagtggtgtcggcgtgtcagtgtc 22868028  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 366
Target Start/End: Complemental strand, 6427401 - 6427336
Alignment:
Q  301 acacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 366  Q
    ||||||| ||| | |||||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  6427401 acacatataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtc 6427336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 2896145 - 2896194
Alignment:
Q  317 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 366  Q
    |||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  2896145 tgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 2896194  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 36878496 - 36878447
Alignment:
Q  317 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 366  Q
    |||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  36878496 tgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtc 36878447  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 9709854 - 9709806
Alignment:
Q  318 gaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 366  Q
    ||||||||||||||||||| ||||||| | || ||||| ||||||||||    
T  9709854 gaattatgtgattttctcaaattattagcggtgtaggcatgtcagtgtc 9709806  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 31236584 - 31236644
Alignment:
Q  300 gacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtc 360  Q
    |||||||| ||| | |||||||||||||||||||||| ||||||| |||| | ||||||||    
T  31236584 gacacatataattacattgaattatgtgattttctcaaattattagcagtgtcggcgtgtc 31236644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 13844622 - 13844674
Alignment:
Q  319 aattatgtgattttctcatattattatcagtctaggcgtgtcagtgtcatgtc 371  Q
    |||||||||||||||||| ||||||| |||| | |||||||| ||||| ||||    
T  13844622 aattatgtgattttctcaaattattagcagtgtcggcgtgtccgtgtcgtgtc 13844674  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 18420456 - 18420504
Alignment:
Q  315 attgaattatgtgattttctcatattattatcagtctaggcgtgtcagt 363  Q
    |||||||||||||||||||||| ||||||| |||| | |||||||||||    
T  18420456 attgaattatgtgattttctcaaattattagcagtgttggcgtgtcagt 18420504  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 365
Target Start/End: Original strand, 21782842 - 21782890
Alignment:
Q  317 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgt 365  Q
    |||||||||||||||||||| ||||||| |||| | |||||||||||||    
T  21782842 tgaattatgtgattttctcaaattattagcagtgtcggcgtgtcagtgt 21782890  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 366
Target Start/End: Original strand, 7265600 - 7265666
Alignment:
Q  300 gacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtc 366  Q
    |||||||| ||| | | |||||||||||||||||||| ||||||| | || | ||||||||||||||    
T  7265600 gacacatataattacactgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtc 7265666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 19040406 - 19040341
Alignment:
Q  298 cagacacatacaatgaaattgaattatgtgattttctcatattattatcagtctaggcgtgtcagt 363  Q
    |||||||||| ||| | | |||||||||||||||||||| ||||||| | || | |||||||||||    
T  19040406 cagacacatataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagt 19040341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 348
Target Start/End: Complemental strand, 32299312 - 32299279
Alignment:
Q  315 attgaattatgtgattttctcatattattatcag 348  Q
    |||||||||||||||||||||| |||||||||||    
T  32299312 attgaattatgtgattttctcaaattattatcag 32299279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 344
Target Start/End: Complemental strand, 9617486 - 9617442
Alignment:
Q  300 gacacatacaatgaaattgaattatgtgattttctcatattatta 344  Q
    |||||||| ||| | |||||||||||||||||||||| |||||||    
T  9617486 gacacatataattacattgaattatgtgattttctcaaattatta 9617442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 30866151 - 30866195
Alignment:
Q  300 gacacatacaatgaaattgaattatgtgattttctcatattatta 344  Q
    |||||||| ||| | |||||||||||||||||||||| |||||||    
T  30866151 gacacatataattacattgaattatgtgattttctcaaattatta 30866195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 28588698 - 28588756
Alignment:
Q  317 tgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtcatgtcgtgt 375  Q
    |||||||||||||||||||| ||||||| | || | ||||||||| ||| |||||||||    
T  28588698 tgaattatgtgattttctcaaattattaccggtgtcggcgtgtcaatgttatgtcgtgt 28588756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 31084360 - 31084304
Alignment:
Q  315 attgaattatgtgattttctcatattattatcagtctaggcgtgtcagtgtcatgtc 371  Q
    |||||||||||||||||| ||| ||||||| | || | |||||||||||||| ||||    
T  31084360 attgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtcgtgtc 31084304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 344
Target Start/End: Complemental strand, 26445 - 26401
Alignment:
Q  300 gacacatacaatgaaattgaattatgtgattttctcatattatta 344  Q
    |||||||| || || |||||||||||||||||||||| |||||||    
T  26445 gacacatataacgacattgaattatgtgattttctcaaattatta 26401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 13807206 - 13807162
Alignment:
Q  315 attgaattatgtgattttctcatattattatcagtctaggcgtgt 359  Q
    |||||||||||||||||||||| ||| |||||||| | |||||||    
T  13807206 attgaattatgtgattttctcaaattgttatcagtgttggcgtgt 13807162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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