View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19352_low_2 (Length: 437)
Name: NF19352_low_2
Description: NF19352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19352_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 12268852 - 12268453
Alignment:
| Q |
18 |
cataactcttctagctatttatcttttctgaatctggactaaaattctccagtttgtgatgttttagattttgcagatgactcacccaaaaagatatttg |
117 |
Q |
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| T |
12268852 |
cataactcttctagctatttatcttttctgaatctggactaaaattctccagtttgtgatgttttagattttgcagatgactcacccaaaaagatatttg |
12268753 |
T |
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| Q |
118 |
cattagacctttatttttt-atagcaaacgattctataaaataatttataatttattagtaataaatgaaaatattgatatggggggatgggtagccact |
216 |
Q |
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| T |
12268752 |
cattagacctttatttttttatagcaaacgattctataaaataatttataatttattagtaataaatgaaaatattgatatggg--------tagccact |
12268661 |
T |
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| Q |
217 |
actgcatttgtgacttttagtaacactcactcactcaccttgtaacatttgttaaattgttactgctatggtgattttgtaacatttccaaaatgtgttt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12268660 |
actgcatttgtgacttttagtaacactcactcactcaccttgtaacatttgttaaattgttactgatatggtgattttgtaacatttccaaaatgtgttt |
12268561 |
T |
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| Q |
317 |
catactttgtaagttgtaacaatctttttgttattagtgctttataattttccttttaaattacatttcaattttctaactctttaaatttctctcactt |
416 |
Q |
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| T |
12268560 |
catactttgtacgttgtaacaatctttttgttattagtgctttataattttccttttaaattacatttcaattttctaactctttaaatttctctcactt |
12268461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 137 - 250
Target Start/End: Complemental strand, 12270276 - 12270163
Alignment:
| Q |
137 |
atagcaaacgattctataaaataatttataatttattagtaataaatgaaaatattgatatggggggatgggtagccactactgcatttgtgacttttag |
236 |
Q |
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| T |
12270276 |
atagccaacgattctttaaagtaatttataatttattgcaaataaatgaaaatatttatatggggtgattggtagccactactacatttatgactttttg |
12270177 |
T |
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| Q |
237 |
taacactcactcac |
250 |
Q |
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||||||| |||||| |
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| T |
12270176 |
taacacttactcac |
12270163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 17032100 - 17032022
Alignment:
| Q |
330 |
ttgtaacaatctttttgttattagtgctttataattttccttttaaattacatttcaattttctaactctttaaatttctc |
410 |
Q |
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| T |
17032100 |
ttgtaactctcttttagttattagtg-tttataatttgccttttaaaatacatttcaattttctaact-tttaaatttctc |
17032022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 410
Target Start/End: Complemental strand, 17562536 - 17562458
Alignment:
| Q |
330 |
ttgtaacaatctttttgttattagtgctttataattttccttttaaattacatttcaattttctaactctttaaatttctc |
410 |
Q |
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| T |
17562536 |
ttgtaactctcttttagttattagtg-tttataatttgccttttaaaatacatttcaattttctaact-tttaaatttctc |
17562458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 392
Target Start/End: Original strand, 17030575 - 17030627
Alignment:
| Q |
339 |
tctttttgttattagtgctttataattttccttttaaattacatttcaattttc |
392 |
Q |
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|||||| |||||||||| |||||||||||||||||||| ||||||||| ||||| |
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| T |
17030575 |
tcttttagttattagtg-tttataattttccttttaaaatacatttcagttttc |
17030627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 392
Target Start/End: Original strand, 17561011 - 17561063
Alignment:
| Q |
339 |
tctttttgttattagtgctttataattttccttttaaattacatttcaattttc |
392 |
Q |
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|||||| |||||||||| |||||||||||||||||||| ||||||||| ||||| |
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| T |
17561011 |
tcttttagttattagtg-tttataattttccttttaaaatacatttcagttttc |
17561063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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