View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19352_low_6 (Length: 285)
Name: NF19352_low_6
Description: NF19352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19352_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 27034674 - 27034933
Alignment:
| Q |
1 |
acagacacaggcattggcatcgaacacgacactgacacacgtcagacactagatacatcttctactatagagaaaatttatctttttgtaattgtcaatc |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27034674 |
acagacacaggcattggcatcgaacacgac--tgacacacgtcagacaccagatacatcttctactatagagaaaatttatctttttgtaattgtcaatc |
27034771 |
T |
|
| Q |
101 |
tttcatatcttgtgtcataagtaatagtagtattttgaattaagaggttaggttcaaatgattaatgagttccaacgaaagtcaaatcgatcagagtacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27034772 |
tttcatatcttgtgtcataagtaatagtagtattctgaattaagaggttaggttcaaatgattaatgagttccaacgaaagtcaaatcgatcagagtacc |
27034871 |
T |
|
| Q |
201 |
caagttcaagctttggttggaacaataagttgtcatactttattcacctctttgccaaactc |
262 |
Q |
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| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
27034872 |
cgagttcaagctttggttggaacaataagttgtcgtactttattcacctctttgccgaactc |
27034933 |
T |
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