View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19353_high_2 (Length: 275)
Name: NF19353_high_2
Description: NF19353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19353_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 6 - 260
Target Start/End: Original strand, 30385612 - 30385866
Alignment:
| Q |
6 |
ccaagaatatatcaatcctatagtgatgcaccatagttacatttgtttgatgggatcgacctctttccaagacatattgtgcactcatgtcaggaatctc |
105 |
Q |
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| T |
30385612 |
ccaagaaaatatcaatcctatagtgatgcaccatagttacatttgtttgacgggatcgacctcttcccaagacatattgtgcactcatgtcaggaatctc |
30385711 |
T |
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| Q |
106 |
aatctcatgttttagacaaaacaatttcacattttctaacaaatcagaccatccatcatttcttagttgttgaagaagtacttttgaagtagaaacaaga |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30385712 |
tatctcatgttttagacaaaacaatttcacattttctaacaaatcagaccatccatcatttcttagttgttgaagaagtacttttgaagtagaaacaaga |
30385811 |
T |
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| Q |
206 |
tgcattgcatttaaaatgtcttgagagcgtgattgcaatgcttgacaaagaatat |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30385812 |
tgcattgcatttaaaatgtcttgagagcgtgattgcaatgcttgacaaagaatat |
30385866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 6 - 260
Target Start/End: Original strand, 304810 - 305064
Alignment:
| Q |
6 |
ccaagaatatatcaatcctatagtgatgcaccatagttacatttgtttgatgggatcgacctctttccaagacatattgtgcactcatgtcaggaatctc |
105 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
304810 |
ccaagaaaatatcaatcctatagtgatgcaccatagttacatttgtttgacgggattgacctcttcccaagacatattgtgcactcatgtcaggaatctc |
304909 |
T |
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| Q |
106 |
aatctcatgttttagacaaaacaatttcacattttctaacaaatcagaccatccatcatttcttagttgttgaagaagtacttttgaagtagaaacaaga |
205 |
Q |
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| T |
304910 |
tatctcatgttttagacaaaacaatttcacattttctaacaaatcagaccatccatcatttcttagttgttgaagaagtacttttgaagtagaaacaaga |
305009 |
T |
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| Q |
206 |
tgcattgcatttaaaatgtcttgagagcgtgattgcaatgcttgacaaagaatat |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
305010 |
tgcattgcatttaaaatgtcttgagagcgtgattgcaatgcttgacaaagaatat |
305064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 6 - 260
Target Start/End: Complemental strand, 2829307 - 2829053
Alignment:
| Q |
6 |
ccaagaatatatcaatcctatagtgatgcaccatagttacatttgtttgatgggatcgacctctttccaagacatattgtgcactcatgtcaggaatctc |
105 |
Q |
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|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2829307 |
ccaagaaaatatcaatcctatagtgatgcaccatagttacatttgtttgacgggattgacctcttcccaagacatattgtgcactcatgtcaggaatctc |
2829208 |
T |
|
| Q |
106 |
aatctcatgttttagacaaaacaatttcacattttctaacaaatcagaccatccatcatttcttagttgttgaagaagtacttttgaagtagaaacaaga |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2829207 |
tatctcatgttttagacaaaacaatttcacattttctaacaaatcagaccatccatcatttcttagttgttgaagaagtacttttgaagtagaaacaaga |
2829108 |
T |
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| Q |
206 |
tgcattgcatttaaaatgtcttgagagcgtgattgcaatgcttgacaaagaatat |
260 |
Q |
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| T |
2829107 |
tgcattgcatttaaaatgtcttgagagcgtgattgcaatgcttgacaaagaatat |
2829053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 260
Target Start/End: Original strand, 32823987 - 32824241
Alignment:
| Q |
6 |
ccaagaatatatcaatcctatagtgatgcaccatagttacatttgtttgatgggatcgacctctttccaagacatattgtgcactcatgtcaggaatctc |
105 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||||| |
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| T |
32823987 |
ccaagaaaatatcaaccctatagtgatgcaccatagttacatttgtttgacgggatcgacctcttcctaagacatattgtgctctcatgtcaggaatctc |
32824086 |
T |
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| Q |
106 |
aatctcatgttttagacaaaacaatttcacattttctaacaaatcagaccatccatcatttcttagttgttgaagaagtacttttgaagtagaaacaaga |
205 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| |||||||||| ||||||||||||||||||| |
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| T |
32824087 |
tatctcatgttttagacaaaacaatttcacattttctaacaaattaggccatccatcatttctcagttgctgaagaagtaattttgaagtagaaacaaga |
32824186 |
T |
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| Q |
206 |
tgcattgcatttaaaatgtcttgagagcgtgattgcaatgcttgacaaagaatat |
260 |
Q |
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| T |
32824187 |
tgcattgcatttaaaatgtcttgagagcgtgattgcaatgcttgacaaagaatat |
32824241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 87 - 260
Target Start/End: Original strand, 24783859 - 24784032
Alignment:
| Q |
87 |
cactcatgtcaggaatctcaatctcatgttttagacaaaacaatttcacattttctaacaaatcagaccatccatcatttcttagttgttgaagaagtac |
186 |
Q |
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||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |||||||||||||||| |
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| T |
24783859 |
cactcatgtaaggaatatatatctcgtgttttagacaaaacaatttcacattttctagcaaattagaccatccatcatttttcagttgttgaagaagtaa |
24783958 |
T |
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| Q |
187 |
ttttgaagtagaaacaagatgcattgcatttaaaatgtcttgagagcgtgattgcaatgcttgacaaagaatat |
260 |
Q |
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| T |
24783959 |
ttttgaagtagaaacaaaatgcattgcatttaaaatgttttgagagcgtgattgcaatgcttgacaaagaatat |
24784032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 6 - 102
Target Start/End: Complemental strand, 13769610 - 13769514
Alignment:
| Q |
6 |
ccaagaatatatcaatcctatagtgatgcaccatagttacatttgtttgatgggatcgacctctttccaagacatattgtgcactcatgtcaggaat |
102 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
13769610 |
ccaagaaaatatcaatcctatagtgatgcaccatagttacatttgtttgacgggatcgacctcttcccaagacatattgtgcactcatgtcaggaat |
13769514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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