View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19353_high_4 (Length: 257)
Name: NF19353_high_4
Description: NF19353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19353_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 27829918 - 27829791
Alignment:
| Q |
18 |
caaataggttcaacgagcaacaatttcaatagaattaaattgctatattttcctatttatgtaacttcctctgtttgtatatccactatccaaccatata |
117 |
Q |
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| T |
27829918 |
caaataggttcaacgagcaacaatttcaatagaatcaaattgctatattttcctatttatgtaacttcctctgtttgtatatccactatccaaccatata |
27829819 |
T |
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| Q |
118 |
ctatcagatttattatgggtactaacac |
145 |
Q |
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| T |
27829818 |
ctatcagatttattatgggtactaacac |
27829791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 141 - 251
Target Start/End: Complemental strand, 27826781 - 27826671
Alignment:
| Q |
141 |
aacacaaaactgcatgactcaatctatagtatatcatatcacgatattcattcacaaagaaacaattgtttcaacctacttatgtaactatctgcatatt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
27826781 |
aacacaaaactgcatgactcaatctatagtatatcatatcacgatattcattcacaaagaaacaattgtttcaacctatttatgtaactatctgcatatt |
27826682 |
T |
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| Q |
241 |
ccctatgctac |
251 |
Q |
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| T |
27826681 |
ccctatgctac |
27826671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 38964508 - 38964574
Alignment:
| Q |
144 |
acaaaactgcatgactcaatctatagtatatcatatcacgatattcattcacaaagaaacaattgtt |
210 |
Q |
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| T |
38964508 |
acaaaaatgcatgactcaacctatagtatattatatcacaattttcatcagcaaataaacaattgtt |
38964574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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