View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19353_low_1 (Length: 614)

Name: NF19353_low_1
Description: NF19353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19353_low_1
NF19353_low_1
[»] chr1 (17 HSPs)
chr1 (1-203)||(31126382-31126583)
chr1 (498-610)||(19151596-19151707)
chr1 (498-610)||(23678652-23678763)
chr1 (503-610)||(17224471-17224577)
chr1 (498-600)||(25871988-25872089)
chr1 (211-272)||(19151991-19152052)
chr1 (212-272)||(25871695-25871755)
chr1 (213-272)||(23679050-23679109)
chr1 (213-260)||(17224158-17224205)
chr1 (498-539)||(17224425-17224466)
chr1 (503-562)||(25871952-25872009)
chr1 (498-540)||(19151747-19151789)
chr1 (498-540)||(23678803-23678845)
chr1 (33-165)||(31077104-31077233)
chr1 (498-562)||(19151686-19151748)
chr1 (498-562)||(23678742-23678804)
chr1 (138-183)||(31131127-31131172)
[»] chr8 (6 HSPs)
chr8 (473-611)||(31387146-31387284)
chr8 (499-611)||(24924275-24924386)
chr8 (346-405)||(31387026-31387085)
chr8 (211-273)||(31386891-31386953)
chr8 (499-537)||(24924404-24924442)
chr8 (213-245)||(1086584-1086616)
[»] chr3 (7 HSPs)
chr3 (500-611)||(13822685-13822796)
chr3 (498-610)||(4264770-4264881)
chr3 (209-272)||(4264440-4264503)
chr3 (217-272)||(13823009-13823064)
chr3 (519-562)||(13822777-13822820)
chr3 (498-540)||(4264688-4264730)
chr3 (498-562)||(4264729-4264791)
[»] chr6 (2 HSPs)
chr6 (504-611)||(22052894-22053002)
chr6 (501-538)||(22053009-22053046)
[»] chr2 (2 HSPs)
chr2 (504-611)||(44363279-44363387)
chr2 (501-538)||(44363394-44363431)
[»] chr7 (5 HSPs)
chr7 (498-610)||(41546347-41546458)
chr7 (213-272)||(41546039-41546098)
chr7 (498-540)||(41546265-41546307)
chr7 (498-562)||(41546306-41546368)
chr7 (223-272)||(12103200-12103249)
[»] chr4 (7 HSPs)
chr4 (498-610)||(55039645-55039756)
chr4 (498-610)||(14055855-14055965)
chr4 (211-272)||(55039335-55039396)
chr4 (212-272)||(14056244-14056304)
chr4 (498-539)||(14056006-14056047)
chr4 (498-540)||(55039563-55039605)
chr4 (498-562)||(55039604-55039666)
[»] scaffold0008 (1 HSPs)
scaffold0008 (498-611)||(86473-86585)
[»] chr5 (1 HSPs)
chr5 (221-269)||(1501218-1501266)


Alignment Details
Target: chr1 (Bit Score: 124; Significance: 2e-63; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 31126583 - 31126382
Alignment:
Q  1 cggaaaaagcaaaagtggaaccgaaaattggataaggtttgggaatggcggtggaagagggtgtttttggggattttgataattttgttttggctatgaa 100  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |||||||||||||| |||    
T  31126583 cggaaaaagcaaatatggaaccgaaaattggataaggtttgggaatggcggtggaggagtgtgtttttggggatattgatagttttgttttggctaagaa 31126484  T
Q  101 taagaacgaaatgagagttacagagtaataaagtaagaaagaaaccaatgtttcgagttccattttgtacgtaagata--tttcactttggttgctatca 198  Q
    ||||||||| | |||||||||||||   ||||||||||||||||||||| ||||||||||||||| ||||||||||||  ||| |||| ||||||||||     
T  31126483 taagaacgacacgagagttacagag---taaagtaagaaagaaaccaatatttcgagttccatttggtacgtaagatatttttgacttgggttgctatcg 31126387  T
Q  199 cattg 203  Q
    |||||    
T  31126386 cattg 31126382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 498 - 610
Target Start/End: Complemental strand, 19151707 - 19151596
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 597  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  19151707 gccgccgtctcctgctccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacagtgttcctttttcaact 19151609  T
Q  598 caggtatattctt 610  Q
     |||||| |||||    
T  19151608 aaggtattttctt 19151596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 498 - 610
Target Start/End: Complemental strand, 23678763 - 23678652
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 597  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  23678763 gccgccgtctcctgctccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacagtgttcctttttcaact 23678665  T
Q  598 caggtatattctt 610  Q
     |||||| |||||    
T  23678664 aaggtattttctt 23678652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 503 - 610
Target Start/End: Original strand, 17224471 - 17224577
Alignment:
Q  503 cgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaactcaggt 602  Q
    ||||| |||||||||||||| |||||||||||| | ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17224471 cgtcttctgctccatcttccattcaaccctagc-gagcgccgccgtcacctgctccatctccgacgatctcttttacagtgttcctttttcaactcaggt 17224569  T
Q  603 atattctt 610  Q
    || |||||    
T  17224570 attttctt 17224577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 498 - 600
Target Start/End: Original strand, 25871988 - 25872089
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 597  Q
    ||||||||||||||||| ||||||| |||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||    
T  25871988 gccgccgtctcctgctcaatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacaatctctttcacagtgttccttcttcaact 25872086  T
Q  598 cag 600  Q
    |||    
T  25872087 cag 25872089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 19152052 - 19151991
Alignment:
Q  211 aagagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 272  Q
    ||||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||    
T  19152052 aagagcagtgataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 19151991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 25871695 - 25871755
Alignment:
Q  212 agagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 272  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||||||    
T  25871695 agagcagtgataggtgtaccaccataggtggcaatacaccttataccacccttttgtggca 25871755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 23679109 - 23679050
Alignment:
Q  213 gagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 272  Q
    ||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||    
T  23679109 gagcagtgataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 23679050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 17224158 - 17224205
Alignment:
Q  213 gagcagtgataggtgtaccaccataggtggcaacacatcttataccac 260  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  17224158 gagcagtgataggtgtaccaccataggtggcaatacaccttataccac 17224205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 498 - 539
Target Start/End: Original strand, 17224425 - 17224466
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcg 539  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  17224425 gccgccgtctcccgctccatcttccgttcaaccctagccgcg 17224466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 503 - 562
Target Start/End: Original strand, 25871952 - 25872009
Alignment:
Q  503 cgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 562  Q
    |||||||||||||||||||||||||||||||||  | |||| ||||||||||||| ||||    
T  25871952 cgtctcctgctccatcttccgttcaaccctagc--ctcgccgccgtctcctgctcaatct 25872009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 540
Target Start/End: Complemental strand, 19151789 - 19151747
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcgc 540  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  19151789 gccgccgtctcctgatccatcttccattcaaccctagccgcgc 19151747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 540
Target Start/End: Complemental strand, 23678845 - 23678803
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcgc 540  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  23678845 gccgccgtctcctgatccatcttccattcaaccctagccgcgc 23678803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 165
Target Start/End: Complemental strand, 31077233 - 31077104
Alignment:
Q  33 taaggtttgggaatggcggtggaagagggtgtttttggggattttgataattttgttttggctatgaataagaacgaaatgagagttacagagtaataaa 132  Q
    |||| |||||||||||||||||| |||||||||||| || |||| |||  |||| |  |||||| |||||||||| ||| ||| | | | |||    |||    
T  31077233 taagttttgggaatggcggtggaggagggtgttttttggaatttggattgttttttagtggctaagaataagaaccaaacgagtggtgctgag---aaaa 31077137  T
Q  133 gtaagaaagaaaccaatgtttcgagttccattt 165  Q
    |||| ||||||| ||| ||||||||||||||||    
T  31077136 gtaacaaagaaagcaaagtttcgagttccattt 31077104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 562
Target Start/End: Complemental strand, 19151748 - 19151686
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 562  Q
    ||||||||||  ||||||||||||||||  |||||||||  ||||| ||||||||||||||||||    
T  19151748 gccgccgtcttatgctccatcttccgttacaccctagcc--gcgccgccgtctcctgctccatct 19151686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 562
Target Start/End: Complemental strand, 23678804 - 23678742
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 562  Q
    ||||||||||  ||||||||||||||||  |||||||||  ||||| ||||||||||||||||||    
T  23678804 gccgccgtcttatgctccatcttccgttacaccctagcc--gcgccgccgtctcctgctccatct 23678742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 31131172 - 31131127
Alignment:
Q  138 aaagaaaccaatgtttcgagttccattttgtacgtaagatatttca 183  Q
    |||||||||||||||||| ||||||||| |||||||||||| ||||    
T  31131172 aaagaaaccaatgtttcgggttccatttggtacgtaagatacttca 31131127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 7e-63; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 473 - 611
Target Start/End: Original strand, 31387146 - 31387284
Alignment:
Q  473 gttcaaccttagccgcacgccgccggccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatct 572  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  31387146 gttcaaccttagccgcacgccgtcggccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccgccgtctcctgctccatctccgatgatct 31387245  T
Q  573 ctttcacagtgttcctttttcaactcaggtatattcttc 611  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  31387246 ctttcacagtgttcctttttcaactcaggtattttcttc 31387284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 499 - 611
Target Start/End: Complemental strand, 24924386 - 24924275
Alignment:
Q  499 ccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaactc 598  Q
    ||||||| ||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24924386 ccgccgtgtcctgctccatcttccgctcaaccctagc-gcgcgccgccgtctcctgctccatctccgacgatctctttcacagtgttcctttttgaactc 24924288  T
Q  599 aggtatattcttc 611  Q
    |||||| ||||||    
T  24924287 aggtattttcttc 24924275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 346 - 405
Target Start/End: Original strand, 31387026 - 31387085
Alignment:
Q  346 tcagccgtacctctctcactctctcatttcaattcatcgtgaaaacttctctttcaccct 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31387026 tcagccgtacctctctcactctctcatttcaattcatcgtgaaaacttctctttcaccct 31387085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 31386891 - 31386953
Alignment:
Q  211 aagagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggcat 273  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31386891 aagagcagtgataggtgtaccaccataggtggcaacacaccttataccactcttatgtggcat 31386953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 499 - 537
Target Start/End: Complemental strand, 24924442 - 24924404
Alignment:
Q  499 ccgccgtctcctgctccatcttccgttcaaccctagccg 537  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  24924442 ccgccgtctcctgctccatcttccgttgaaccctagccg 24924404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 1086616 - 1086584
Alignment:
Q  213 gagcagtgataggtgtaccaccataggtggcaa 245  Q
    ||||||||||| |||||||||||||||||||||    
T  1086616 gagcagtgataagtgtaccaccataggtggcaa 1086584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 500 - 611
Target Start/End: Complemental strand, 13822796 - 13822685
Alignment:
Q  500 cgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaactca 599  Q
    ||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13822796 cgccgtctcctgctccatcttccattcaaccctagccgctagccgccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaactca 13822697  T
Q  600 ggtatattcttc 611  Q
    ||||| ||||||    
T  13822696 ggtattttcttc 13822685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 498 - 610
Target Start/End: Original strand, 4264770 - 4264881
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 597  Q
    ||||||||||||||| ||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||||    
T  4264770 gccgccgtctcctgccccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacaatgttcctttttcaact 4264868  T
Q  598 caggtatattctt 610  Q
     |||||| |||||    
T  4264869 aaggtattttctt 4264881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 4264440 - 4264503
Alignment:
Q  209 aaaagagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 272  Q
    ||||||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||    
T  4264440 aaaagagcagtgataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 4264503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 272
Target Start/End: Complemental strand, 13823064 - 13823009
Alignment:
Q  217 agtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 272  Q
    |||||||||| |||||||||||||||||| ||| |||||||||| |||||||||||    
T  13823064 agtgataggtataccaccataggtggcaatacaccttataccacccttatgtggca 13823009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 519 - 562
Target Start/End: Complemental strand, 13822820 - 13822777
Alignment:
Q  519 ttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 562  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  13822820 ttccgttcaaccctagccgcgcgtcgccgtctcctgctccatct 13822777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 540
Target Start/End: Original strand, 4264688 - 4264730
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcgc 540  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  4264688 gccgccgtctcctgatccatcttccattcaaccctagccgcgc 4264730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 562
Target Start/End: Original strand, 4264729 - 4264791
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 562  Q
    ||||||||||  ||||||||||||||||  ||||||||  |||||| ||||||||||| ||||||    
T  4264729 gccgccgtcttatgctccatcttccgttacaccctagc--cgcgccgccgtctcctgccccatct 4264791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 504 - 611
Target Start/End: Complemental strand, 22053002 - 22052894
Alignment:
Q  504 gtctcctgctccatcttccgttcaaccctagc-cgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaactcaggt 602  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22053002 gtctcctgctccatcttccgttcaaccctagcgcgcgcgccgccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaacttaggt 22052903  T
Q  603 atattcttc 611  Q
    || ||||||    
T  22052902 attttcttc 22052894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 538
Target Start/End: Complemental strand, 22053046 - 22053009
Alignment:
Q  501 gccgtctcctgctccatcttccgttcaaccctagccgc 538  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22053046 gccgtctcctgctccatcttccgttcaaccctagccgc 22053009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 504 - 611
Target Start/End: Complemental strand, 44363387 - 44363279
Alignment:
Q  504 gtctcctgctccatcttccgttcaaccctagc-cgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaactcaggt 602  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44363387 gtctcctgctccatcttccgttcaaccctagcgcgcgcgccgccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaacttaggt 44363288  T
Q  603 atattcttc 611  Q
    || ||||||    
T  44363287 attttcttc 44363279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 538
Target Start/End: Complemental strand, 44363431 - 44363394
Alignment:
Q  501 gccgtctcctgctccatcttccgttcaaccctagccgc 538  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44363431 gccgtctcctgctccatcttccgttcaaccctagccgc 44363394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 8e-38; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 498 - 610
Target Start/End: Original strand, 41546347 - 41546458
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 597  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  41546347 gccgccgtctcctgctccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacagtgttcctttttcaact 41546445  T
Q  598 caggtatattctt 610  Q
     |||||| |||||    
T  41546446 aaggtattttctt 41546458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 213 - 272
Target Start/End: Original strand, 41546039 - 41546098
Alignment:
Q  213 gagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 272  Q
    ||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||    
T  41546039 gagcagtgataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 41546098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 540
Target Start/End: Original strand, 41546265 - 41546307
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcgc 540  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  41546265 gccgccgtctcctgatccatcttccattcaaccctagccgcgc 41546307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 562
Target Start/End: Original strand, 41546306 - 41546368
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 562  Q
    ||||||||||  ||||||||||||||||  ||||||||  |||||| ||||||||||||||||||    
T  41546306 gccgccgtcttatgctccatcttccgttacaccctagc--cgcgccgccgtctcctgctccatct 41546368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 12103200 - 12103249
Alignment:
Q  223 aggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 272  Q
    |||| |||||||||||||||||| ||| |||||||||| ||| |||||||    
T  12103200 aggtataccaccataggtggcaatacaccttataccacccttgtgtggca 12103249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 8e-38; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 498 - 610
Target Start/End: Original strand, 55039645 - 55039756
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 597  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  55039645 gccgccgtctcctgctccatcttccattcaaccctagc-gcgcgccgccgtcacctgctccatctccgacgatctgtttcacagtgttcctttttcaact 55039743  T
Q  598 caggtatattctt 610  Q
     |||||| |||||    
T  55039744 aaggtattttctt 55039756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 498 - 610
Target Start/End: Complemental strand, 14055965 - 14055855
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 597  Q
    ||||||||||| || |||||||||| |||||| | ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| |    
T  14055965 gccgccgtctcttgttccatcttccattcaacgcaagc-gcgcgccgccgtcacctgctccatctccgacgatctctttcacagtgtt-ctttttcaagt 14055868  T
Q  598 caggtatattctt 610  Q
    ||||||| |||||    
T  14055867 caggtattttctt 14055855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 55039335 - 55039396
Alignment:
Q  211 aagagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 272  Q
    ||||||||||||||||||||||||||||||||||  ||| |||||||||| |||||||||||    
T  55039335 aagagcagtgataggtgtaccaccataggtggcactacaccttataccacccttatgtggca 55039396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 14056304 - 14056244
Alignment:
Q  212 agagcagtgataggtgtaccaccataggtggcaacacatcttataccactcttatgtggca 272  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||||||    
T  14056304 agagcagtgataggtgtaccaccataggtggcaatacaccttataccacccttgtgtggca 14056244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 498 - 539
Target Start/End: Complemental strand, 14056047 - 14056006
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcg 539  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  14056047 gccgccgtctcctgctccatcttccgtccaaccctagccgcg 14056006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 540
Target Start/End: Original strand, 55039563 - 55039605
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcgc 540  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  55039563 gccgccgtctcctgatccatcttccattcaaccctagccgcgc 55039605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 562
Target Start/End: Original strand, 55039604 - 55039666
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatct 562  Q
    ||||||||||  ||||||||||||| ||  ||||||||  |||||| ||||||||||||||||||    
T  55039604 gccgccgtcttatgctccatcttccattacaccctagc--cgcgccgccgtctcctgctccatct 55039666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 498 - 611
Target Start/End: Original strand, 86473 - 86585
Alignment:
Q  498 gccgccgtctcctgctccatcttccgttcaaccctagccgcgcgccaccgtctcctgctccatctccgacgatctctttcacagtgttcctttttcaact 597  Q
    |||| ||||||||||| |||||||||||| ||||||||  |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  86473 gccgtcgtctcctgcttcatcttccgttcgaccctagca-cgcgccgccgtctcctgctctatctccgacgatctctttcacagtgttcctttttcaact 86571  T
Q  598 caggtatattcttc 611  Q
    ||||||| ||||||    
T  86572 caggtattttcttc 86585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 1501266 - 1501218
Alignment:
Q  221 ataggtgtaccaccataggtggcaacacatcttataccactcttatgtg 269  Q
    |||||| |||||||||||||||||| ||| ||| |||||| ||||||||    
T  1501266 ataggtataccaccataggtggcaatacaccttctaccacccttatgtg 1501218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University