View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19353_low_2 (Length: 404)

Name: NF19353_low_2
Description: NF19353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19353_low_2
NF19353_low_2
[»] chr3 (2 HSPs)
chr3 (11-388)||(33367490-33367862)
chr3 (22-67)||(33813603-33813648)
[»] chr4 (9 HSPs)
chr4 (11-388)||(31523638-31524010)
chr4 (1-126)||(54568421-54568546)
chr4 (1-108)||(22209231-22209338)
chr4 (21-128)||(53745312-53745419)
chr4 (21-128)||(22206135-22206243)
chr4 (26-127)||(26626129-26626230)
chr4 (21-80)||(8649653-8649712)
chr4 (21-80)||(8661460-8661519)
chr4 (21-67)||(23137542-23137588)
[»] chr1 (5 HSPs)
chr1 (15-388)||(49193600-49193968)
chr1 (35-125)||(39333049-39333139)
chr1 (26-127)||(17288023-17288124)
chr1 (21-67)||(19039287-19039333)
chr1 (1-48)||(45237661-45237708)
[»] chr8 (3 HSPs)
chr8 (1-126)||(8813450-8813575)
chr8 (21-80)||(44071413-44071471)
chr8 (1-57)||(16468580-16468636)
[»] chr5 (3 HSPs)
chr5 (1-126)||(12873953-12874078)
chr5 (36-128)||(14988498-14988590)
chr5 (21-66)||(16056617-16056662)
[»] chr6 (6 HSPs)
chr6 (1-126)||(27771102-27771226)
chr6 (12-119)||(23389228-23389335)
chr6 (21-128)||(24845695-24845802)
chr6 (1-73)||(24691742-24691814)
chr6 (1-128)||(8497732-8497860)
chr6 (1-52)||(27118807-27118858)
[»] chr7 (2 HSPs)
chr7 (1-125)||(37446813-37446937)
chr7 (8-52)||(25839376-25839420)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-125)||(414412-414536)
[»] chr2 (3 HSPs)
chr2 (1-128)||(9362075-9362202)
chr2 (26-127)||(28495494-28495595)
chr2 (1-126)||(5076837-5076963)


Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 33367862 - 33367490
Alignment:
Q  11 aagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggta 110  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  33367862 aagtcacaacaatgtaaacatatatagttaataaaagttttataaaaatataaaaatatgttcccttctactacaacaatagcaacaaaatgagatggta 33367763  T
Q  111 gtatacataagaaaaaggactcggcatgttaataagcatgttgatataaacattaactaattgtaccagcatgttgataagtaggtgcaccaatccatat 210  Q
    | |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33367762 gcatacataagaaaaaagactcggcatgttaataagcatgttgatacaaacattaactaattgtaccagcatgttgataagtaggtgcaccaatccatat 33367663  T
Q  211 aagcctgtcgaccaaataccctaccctaagtacagagtacataactgaactgcaccttacactaagtgccaaaccgatataattgtatctaagcacttat 310  Q
    |||| ||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33367662 aagcatgtcgaccaaatac-----cctaagtacagagtacataactgaactgcaccttacactaagtgccaaaccgatataattgtatctaagcacttac 33367568  T
Q  311 taagtgcataagcatgatgatataatatacttcccaccattaaataaatgaaccttctatgtttttgtaggataaatg 388  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33367567 taagtgcataagcatgattatataatatacttcccaccattaaataaatgaaccttctatgtttttgtaggataaatg 33367490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 33813603 - 33813648
Alignment:
Q  22 atgtaaacatatatagttaatagaagttttataaaaatttaaaaat 67  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||    
T  33813603 atgtaaacatatatagttattagaagttttataacaatttaaaaat 33813648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 388
Target Start/End: Original strand, 31523638 - 31524010
Alignment:
Q  11 aagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggta 110  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  31523638 aagtcacaacaatgtaaacatatatagttaataaaagttttataaaaatataaaaatatgttcccttctactacaacaatagcaataaaatgagatggta 31523737  T
Q  111 gtatacataagaaaaaggactcggcatgttaataagcatgttgatataaacattaactaattgtaccagcatgttgataagtaggtgcaccaatccatat 210  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523738 acatacataagaaaaaggactcggcatgttaataagcatgttgatataaacattaactaattgtaccagcatgttgataagtaggtgcaccaatccatat 31523837  T
Q  211 aagcctgtcgaccaaataccctaccctaagtacagagtacataactgaactgcaccttacactaagtgccaaaccgatataattgtatctaagcacttat 310  Q
    ||||||||||||||||||||| |     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  31523838 aagcctgtcgaccaaatacccca-----agtacagagtacatatctgaactgcaccttacactaagtgccaaaccgatataattgtatctaagcacttac 31523932  T
Q  311 taagtgcataagcatgatgatataatatacttcccaccattaaataaatgaaccttctatgtttttgtaggataaatg 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31523933 taagtgcataagcatgatgatataatatacttcccaccattaaataaatgaaccttctacgtttttgtaggataaatg 31524010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 54568421 - 54568546
Alignment:
Q  1 ttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||| ||||||| |||||| ||| ||||||||||||||    
T  54568421 ttaaacgaataagtcacaacactgtaaacatatatagttaatagaagttttaacaaaatttaaaaacatgttcccttctacgacaacaatagcaacaaaa 54568520  T
Q  101 tgagatggtagtatacataagaaaaa 126  Q
    ||| ||||||| |||||||| |||||    
T  54568521 tgaaatggtagcatacataaaaaaaa 54568546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 22209338 - 22209231
Alignment:
Q  1 ttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaa 100  Q
    |||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||  ||| ||||||||||||||    
T  22209338 ttaatcgaatcagtcgcaaaaatgtaaacatatatagttaatagaagttttataacaatttaaaaatatgttcccttctaagacaacaatagcaacaaaa 22209239  T
Q  101 tgagatgg 108  Q
    ||| ||||    
T  22209238 tgaaatgg 22209231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 53745312 - 53745419
Alignment:
Q  21 aatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtatacataa 120  Q
    |||||||| ||||||||||||||||| ||||| || |||||||||||||||||| |||||  ||| |||||| |||||||| | ||||||| ||||||||    
T  53745312 aatgtaaatatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaacaaaattaaatggtagcatacataa 53745411  T
Q  121 gaaaaagg 128  Q
     |||||||    
T  53745412 caaaaagg 53745419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 22206243 - 22206135
Alignment:
Q  21 aatgtaaacatatatagttaatagaagttttataaaaattt-aaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtatacata 119  Q
    ||||||||||||||||||| |||||||||| |||  | ||| ||||||||||||  ||||| |||  ||||||||||||||||| ||||||| |||||||    
T  22206243 aatgtaaacatatatagttgatagaagtttcatatcagttttaaaaatatgttcacttctaatactacaatagcaacaaaatgaaatggtagcatacata 22206144  T
Q  120 agaaaaagg 128  Q
    | |||||||    
T  22206143 acaaaaagg 22206135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 26626129 - 26626230
Alignment:
Q  26 aaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtatacataagaaaa 125  Q
    ||||||||  |||||||||||||||||||  |||||||||||||||||| | |||  ||| ||||| || |||||||| ||||||| |||||||| ||||    
T  26626129 aaacatattcagttaatagaagttttatagcaatttaaaaatatgttccctcctaagacaacaataacagcaaaatgaaatggtagcatacataacaaaa 26626228  T
Q  126 ag 127  Q
    ||    
T  26626229 ag 26626230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 8649653 - 8649712
Alignment:
Q  21 aatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttcta 80  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||||||||| |||||    
T  8649653 aatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttcta 8649712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 8661460 - 8661519
Alignment:
Q  21 aatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttcta 80  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||||||||| |||||    
T  8661460 aatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttcta 8661519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 23137542 - 23137588
Alignment:
Q  21 aatgtaaacatatatagttaatagaagttttataaaaatttaaaaat 67  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||    
T  23137542 aatgtaaatatatatagttaatagaagttttataacaatttaaaaat 23137588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 15 - 388
Target Start/End: Original strand, 49193600 - 49193968
Alignment:
Q  15 cacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtat 114  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||    
T  49193600 cacaacaatgtaaacatatatagttaataaaagttttataaaaatataaaaataagttcccttctactacaacaatagcaacaaaatgagatggtagcat 49193699  T
Q  115 acataagaaaaaggactcggcatgttaataagcatgttgatataaacattaactaattgtaccagcatgttgataagtaggtgcaccaatccatataagc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  49193700 acataagaaaaaggactcggcatgttaataagcatgttgatataaacattaactaattgtaccagcatgttgataagtaggtgcaccaatccatataaga 49193799  T
Q  215 ctgtcgaccaaataccctaccctaagtacagagtacataactgaactgcaccttacactaagtgccaaaccgatataattgtatctaagcacttattaag 314  Q
     |||||||||||||||| |     |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49193800 atgtcgaccaaatacccaa-----agtacaaagtacataactgaactgcaccttacactaagtgccaaaccgatataattgtatctaagcacttactaag 49193894  T
Q  315 tgcataagcatgatgatataatatacttcccaccattaaataaatgaaccttctatgtttttgtaggataaatg 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  49193895 tgcataagcatgatgatataatatacttcccaccattaaataaatgaaccttctacgtttttgtaggataaatg 49193968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 35 - 125
Target Start/End: Original strand, 39333049 - 39333139
Alignment:
Q  35 tagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtatacataagaaaa 125  Q
    ||||| ||||||||||||||  |||||||||||||||||| |||||  ||| |||||||| |||||||| ||||||| |||||||| ||||    
T  39333049 tagttgatagaagttttatagcaatttaaaaatatgttcccttctaagacaacaatagcagcaaaatgaaatggtagcatacataacaaaa 39333139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 17288124 - 17288023
Alignment:
Q  26 aaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtatacataagaaaa 125  Q
    ||||| || ||||||||||||||||||||  |||||||||||||||||| | |||  ||| |||||||| |||||||| ||||||| ||| |||| ||||    
T  17288124 aaacagatttagttaatagaagttttatagcaatttaaaaatatgttccctcctaagacaacaatagcagcaaaatgaaatggtagcatatataacaaaa 17288025  T
Q  126 ag 127  Q
    ||    
T  17288024 ag 17288023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 19039287 - 19039333
Alignment:
Q  21 aatgtaaacatatatagttaatagaagttttataaaaatttaaaaat 67  Q
    |||||||||||||||| |||||||||||||||||| |||| ||||||    
T  19039287 aatgtaaacatatatatttaatagaagttttataacaattaaaaaat 19039333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 45237708 - 45237661
Alignment:
Q  1 ttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagt 48  Q
    ||||||||||||||| ||| |||||||| ||||||||| |||||||||    
T  45237708 ttaaacgaataagtcgcaataatgtaaatatatatagtaaatagaagt 45237661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 8813575 - 8813450
Alignment:
Q  1 ttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaa 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||| ||| |||||||||||||     
T  8813575 ttaaacgaataagtcgcaacaatgtaaacatatatagttaatagaagttttaacaaaatttaaaaatatgttcccttctacgacaacaatagcaacaaat 8813476  T
Q  101 tgagatggtagtatacataagaaaaa 126  Q
    ||| ||||||| |||||||| |||||    
T  8813475 tgaaatggtagcatacataaaaaaaa 8813450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 44071413 - 44071471
Alignment:
Q  21 aatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttcta 80  Q
    |||||||||||||||| |||||||||||||||||| ||||| |||||||||||| |||||    
T  44071413 aatgtaaacatatataattaatagaagttttataacaattt-aaaatatgttcccttcta 44071471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 16468580 - 16468636
Alignment:
Q  1 ttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaa 57  Q
    ||||||||||||||  ||| |||||||| |||||||||||||||||||  |||||||    
T  16468580 ttaaacgaataagttgcaataatgtaaatatatatagttaatagaagtcatataaaa 16468636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 12874078 - 12873953
Alignment:
Q  1 ttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaa 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| ||| ||||||||||||||    
T  12874078 ttaaacgaataagtcgcaacaatgtaaacatatatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagcaacaaaa 12873979  T
Q  101 tgagatggtagtatacataagaaaaa 126  Q
    ||||||| || ||||| | |||||||    
T  12873978 tgagatgataatatacctcagaaaaa 12873953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 14988590 - 14988498
Alignment:
Q  36 agttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtatacataagaaaaagg 128  Q
    ||||||| |||||||||||| |||||||||||||||||| |||||  ||| ||||||||||||||||| | ||||| |||||||| |||||||    
T  14988590 agttaatggaagttttataacaatttaaaaatatgttcccttctaagacaacaatagcaacaaaatgaaaaggtagcatacataacaaaaagg 14988498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 16056617 - 16056662
Alignment:
Q  21 aatgtaaacatatatagttaatagaagttttataaaaatttaaaaa 66  Q
    |||||||| |||||||||||||||||||||||||| ||||||||||    
T  16056617 aatgtaaatatatatagttaatagaagttttataacaatttaaaaa 16056662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 27771226 - 27771102
Alignment:
Q  1 ttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaa 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| |||||| ||| ||||||||||||||    
T  27771226 ttaaacgaataagtcgcaacaatgtaaacatatatagttaatagaagtcttataaagattt-aaaatatgttcccttctacgacaacaatagcaacaaaa 27771128  T
Q  101 tgagatggtagtatacataagaaaaa 126  Q
    ||||||| || ||||| | |||||||    
T  27771127 tgagatgataatatacctcagaaaaa 27771102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 23389335 - 23389228
Alignment:
Q  12 agtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtag 111  Q
    |||| ||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| || ||  ||| |||||| |||||||||| |||||||    
T  23389335 agtcgcaataatgtaaacatatatagttaaaagaagttttataacaatttaaaaatatgttcccttataagacaacaatagaaacaaaatgaaatggtag 23389236  T
Q  112 tatacata 119  Q
     |||||||    
T  23389235 catacata 23389228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 24845695 - 24845802
Alignment:
Q  21 aatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtatacataa 120  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||||||||| |||||  ||| ||| || |||||||| | ||||||| ||||||||    
T  24845695 aatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaaaaggaacaaaattaaatggtagcatacataa 24845794  T
Q  121 gaaaaagg 128  Q
     |||||||    
T  24845795 caaaaagg 24845802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 24691814 - 24691742
Alignment:
Q  1 ttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttc 73  Q
    |||||| |||||||| ||||||||| ||||||||||||||||||||||  |||||||||||||||| ||||||    
T  24691814 ttaaacaaataagtcgcaacaatgtgaacatatatagttaatagaagtcatataaaaatttaaaaacatgttc 24691742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 8497732 - 8497860
Alignment:
Q  1 ttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaattt-aaaaatatgttcctttctactacatcaatagcaacaaa 99  Q
    |||| ||||| | |||||| |||||||| ||||||| || ||||||||||||||  | ||| ||||||||||||  |||||  ||| |||||||||||||    
T  8497732 ttaatcgaatcattcacaataatgtaaatatatataattgatagaagttttatatcagttttaaaaatatgttcacttctaagacaacaatagcaacaaa 8497831  T
Q  100 atgagatggtagtatacataagaaaaagg 128  Q
    |||| ||||||| ||| |||| |||||||    
T  8497832 atgaaatggtagcatagataacaaaaagg 8497860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 27118807 - 27118858
Alignment:
Q  1 ttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagtttta 52  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  27118807 ttaaacgaatgagtcgcaacaatgtaaacatatatagttaatagaagtttta 27118858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 37446813 - 37446937
Alignment:
Q  1 ttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaa 100  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||  ||| |||||||||||||||| |||||| ||| ||||||||||||||    
T  37446813 ttaaacgaataagtcgcaacaatgtaaacatatatcgttaatagaagttttaacaaattttaaaaatatgttcccttctacgacaacaatagcaacaaaa 37446912  T
Q  101 tgagatggtagtatacataagaaaa 125  Q
    ||  ||||||| |||||||| ||||    
T  37446913 tggaatggtagcatacataaaaaaa 37446937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 25839376 - 25839420
Alignment:
Q  8 aataagtcacaacaatgtaaacatatatagttaatagaagtttta 52  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||||    
T  25839376 aataagtcgcaataatgtaaacatatatagttgatagaagtttta 25839420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 414536 - 414412
Alignment:
Q  1 ttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaa 100  Q
    |||||||||||||||  | |||||||||||||||||||| |||||| |||||  || ||||||| ||||||||| |||||| ||| |||||| |||||||    
T  414536 ttaaacgaataagtcgtagcaatgtaaacatatatagttgatagaaattttaacaacatttaaacatatgttcccttctacgacaacaatagaaacaaaa 414437  T
Q  101 tgagatggtagtatacataagaaaa 125  Q
    ||| ||||||| |||||||| ||||    
T  414436 tgaaatggtagcatacataaaaaaa 414412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 9362202 - 9362075
Alignment:
Q  1 ttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaa 100  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||  |||||||||| ||||| ||||||  || ||| | | | ||| ||||||||    
T  9362202 ttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagtcatataaaaattaaaaaacatgttcacttatacaataaccataacaacaaaa 9362103  T
Q  101 tgagatggtagtatacataagaaaaagg 128  Q
      ||||| ||| ||||||| ||||||||    
T  9362102 atagatgatagaatacatatgaaaaagg 9362075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 28495494 - 28495595
Alignment:
Q  26 aaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtatacataagaaaa 125  Q
    |||||||| |||||||||||| |||||||  |||||||||||||||||| | |||  ||| |||||||| |||||||| ||||||| |||||||| ||||    
T  28495494 aaacatatttagttaatagaaattttatagcaatttaaaaatatgttccctcctaagacaacaatagcagcaaaatgaaatggtagcatacataacaaaa 28495593  T
Q  126 ag 127  Q
    ||    
T  28495594 ag 28495595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 5076963 - 5076837
Alignment:
Q  1 ttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaac-aaa 99  Q
    |||||| | |||||| || |||||||||||||||||||| |||||| |||||  || ||||||| ||||||||| |||||| ||| |||||| ||| |||    
T  5076963 ttaaacaattaagtcgcagcaatgtaaacatatatagttgatagaaattttaacaacatttaaacatatgttcccttctacgacaacaatagaaacaaaa 5076864  T
Q  100 atgagatggtagtatacataagaaaaa 126  Q
    |||| | ||||| |||||||| |||||    
T  5076863 atgaaacggtagcatacataaaaaaaa 5076837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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