View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19353_low_3 (Length: 402)
Name: NF19353_low_3
Description: NF19353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19353_low_3 |
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| [»] scaffold1099 (2 HSPs) |
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Alignment Details
Target: scaffold1099 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: scaffold1099
Description:
Target: scaffold1099; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 50 - 231
Target Start/End: Original strand, 382 - 563
Alignment:
| Q |
50 |
cttatggcctggtttcctgcatgatattttcatttaatatagcattgtaatctgtatggagacctcagcaagatgttaacactatacattatcaggttgt |
149 |
Q |
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| T |
382 |
cttatggcctggtttcctgcatgatatttttatttaatatagcattggaatctgtatggagacctcagcaagatgttaacactatacattatcaggttgt |
481 |
T |
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| Q |
150 |
gaaaccacttttacacgagaggacaagaagaaaagtgcaggtcttatcaggatgcggacgagaggagttgttaaatgtaaga |
231 |
Q |
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| T |
482 |
gaaaccacttttacacgagaggacaagaagaaaagtgcaggtcttatcaggatgtggacgagaggagttgttaaatgtaaga |
563 |
T |
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Target: scaffold1099; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 290 - 385
Target Start/End: Original strand, 616 - 711
Alignment:
| Q |
290 |
aactagtcaataattgagatgtgaaggaaaacagtactctctctcttattttccgtttataatgatctcattttttggatatatttactccaaaag |
385 |
Q |
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| T |
616 |
aactagtcaataattgagatgtgaaggaaaacagtactctctctcttattttctgtttataatgatctcattttttggatatatttactccgaaag |
711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 9886727 - 9886674
Alignment:
| Q |
142 |
caggttgtgaaaccacttttacacgagaggacaagaagaaaagtgcaggtctta |
195 |
Q |
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| T |
9886727 |
caggttgtgaagccacttttacaagagaggactaggaaaaaagtgcaagtctta |
9886674 |
T |
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