View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19354_high_2 (Length: 325)
Name: NF19354_high_2
Description: NF19354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19354_high_2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 22 - 325
Target Start/End: Original strand, 36150871 - 36151174
Alignment:
| Q |
22 |
catcatcacccttaccatcaacaacagcatcaacaccattaccagcaacaacagcaacagcgccatcaccaggattaagcacagttccacttgttccaac |
121 |
Q |
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| T |
36150871 |
catcaccacccttaccatcaacaacagcatcaacaccattaccagcaacaacagcaacagcgccatcaccaggattaagcacagttccacttgttccaac |
36150970 |
T |
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| Q |
122 |
aacaccaactggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttcta |
221 |
Q |
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| T |
36150971 |
aacaccagctggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttcta |
36151070 |
T |
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| Q |
222 |
atccgtcttctcaaaacaacacaattaatcaatcaactcaactcacagctggtatcatcgccatcaggttccggagggttaaccatttttgcaccagaag |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36151071 |
atccgtcttctcaaaacaacacaattaatcaatcaactcaactcgcagctggtatcatcgccatcaggttccggtgggttaaccatttttgcaccagaag |
36151170 |
T |
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| Q |
322 |
attc |
325 |
Q |
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|||| |
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| T |
36151171 |
attc |
36151174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 28 - 325
Target Start/End: Original strand, 36154263 - 36154560
Alignment:
| Q |
28 |
cacccttaccatcaacaacagcatcaacaccattaccagcaacaacagcaacagcgccatcaccaggattaagcacagttccacttgttccaacaacacc |
127 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
36154263 |
cacccttaccatcaacaacagcatcaccaccattaccagcaacaacagcaacagcaccatcaccaggattaagtacagttccgcttgttccaacaacacc |
36154362 |
T |
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| Q |
128 |
aactggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttctaatccgt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154363 |
aactggtgcaccatcacccaccataacagtcccaaaaggacccaccattgacataatcaacattcttcaaaaagccaaaaggttctccgttctaatccgt |
36154462 |
T |
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| Q |
228 |
cttctcaaaacaacacaattaatcaatcaactcaactcacagctggtatcatcgccatcaggttccggagggttaaccatttttgcaccagaagattc |
325 |
Q |
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| T |
36154463 |
cttctcaaaacaacacaattaatcaatcaactcaactcgcagctggtatcatcgccatcaggttccggagggttaaccatttttgcaccagaagattc |
36154560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 5273544 - 5273616
Alignment:
| Q |
196 |
aaaaagccaaaaggttctccgttctaatccgtcttctcaaaacaacacaattaatcaatcaactcaactcaca |
268 |
Q |
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||||||| ||||| ||||| ||||| || ||||||||||||||||| || ||||| || |||||||||||||| |
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| T |
5273544 |
aaaaagcaaaaagattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactcaca |
5273616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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