View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19354_low_1 (Length: 254)
Name: NF19354_low_1
Description: NF19354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19354_low_1 |
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| [»] scaffold1999 (1 HSPs) |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: scaffold1999 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold1999
Description:
Target: scaffold1999; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 108 - 254
Target Start/End: Original strand, 38 - 184
Alignment:
| Q |
108 |
ggaagactatgaaacatttaagaggatgtttgtgtacgttcttaggtttggtactcatagaaactatgtcataatttaatcacttgcattcacaccagcc |
207 |
Q |
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| T |
38 |
ggaagactatgaaacatttaagaggatgtttgtgtacgcacttatgtttggtattcatggaaactatgttataatttaatcacttgcattcacaccagcc |
137 |
T |
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| Q |
208 |
atttatacacgttggatataaaccaggcgagcacttatatttttgac |
254 |
Q |
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| T |
138 |
atttatacacgttggatataaaccaggcgagcacttatatttttgac |
184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 108 - 254
Target Start/End: Original strand, 9908532 - 9908678
Alignment:
| Q |
108 |
ggaagactatgaaacatttaagaggatgtttgtgtacgttcttaggtttggtactcatagaaactatgtcataatttaatcacttgcattcacaccagcc |
207 |
Q |
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| T |
9908532 |
ggaagactatgaaacatttaagaggatgtttgtgtacgcacttatgtttggtattcatggaaactatgttataatttaatcacttgcattcacaccagcc |
9908631 |
T |
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| Q |
208 |
atttatacacgttggatataaaccaggcgagcacttatatttttgac |
254 |
Q |
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| T |
9908632 |
atttatacacgttggatataaaccaggcgagcacttatatttttgac |
9908678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 254
Target Start/End: Original strand, 9912922 - 9913060
Alignment:
| Q |
116 |
atgaaacatttaagaggatgtttgtgtacgttcttaggtttggtactcatagaaactatgtcataatttaatcacttgcattcacaccagccatttatac |
215 |
Q |
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| T |
9912922 |
atgaaacatttaagaggatgtttgtgtacgcacttatgtttggtattcatggaaactatgttataatttaatcacttgcattcacaccagccatttatac |
9913021 |
T |
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| Q |
216 |
acgttggatataaaccaggcgagcacttatatttttgac |
254 |
Q |
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| T |
9913022 |
acgttggatataaaccaggcgagcacttatatttttgac |
9913060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 254
Target Start/End: Original strand, 9918698 - 9918836
Alignment:
| Q |
116 |
atgaaacatttaagaggatgtttgtgtacgttcttaggtttggtactcatagaaactatgtcataatttaatcacttgcattcacaccagccatttatac |
215 |
Q |
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| T |
9918698 |
atgaaacatttaagaggatgtttgtgtacgcacttatgtttggtattcatggaaactatgttataatttaatcacttgcattcacaccagccatttatac |
9918797 |
T |
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| Q |
216 |
acgttggatataaaccaggcgagcacttatatttttgac |
254 |
Q |
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| T |
9918798 |
acgttggatataaaccaggcgagcacttatatttttgac |
9918836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 254
Target Start/End: Original strand, 9926610 - 9926748
Alignment:
| Q |
116 |
atgaaacatttaagaggatgtttgtgtacgttcttaggtttggtactcatagaaactatgtcataatttaatcacttgcattcacaccagccatttatac |
215 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9926610 |
atgaaacatttaagaggatgtttgtgtacgcacttatgtttggtattcatggaaactatgttataatttaatcacttgcattcacaccagccatttatac |
9926709 |
T |
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| Q |
216 |
acgttggatataaaccaggcgagcacttatatttttgac |
254 |
Q |
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| T |
9926710 |
acgttggatataaaccaggcgagcacttatatttttgac |
9926748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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