View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19355_high_2 (Length: 614)
Name: NF19355_high_2
Description: NF19355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19355_high_2 |
 | |
|
| [»] scaffold0684 (1 HSPs) |
| | |
|
| [»] scaffold0163 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 559; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 10 - 596
Target Start/End: Complemental strand, 21483026 - 21482440
Alignment:
| Q |
10 |
attatacttactttgactaatgacccattcaccctgttccatggtgttgtcctggaggaaattacagagttaacatcaattccaatatgtggatacttgg |
109 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21483026 |
attatacttactttgactaatgacccactcaccctgttccatggtgttgtcctggaggaaattacagagttaacatcaattccaatatgtggatacttgg |
21482927 |
T |
|
| Q |
110 |
gatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcgcatcaactactccgagatttgcacctccagagttggg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21482926 |
gatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcgcatcaactactccgagatttgaacctccagagttggg |
21482827 |
T |
|
| Q |
210 |
aggaatgacggtatcttgtggtgcaagaaagaagatgattccatcggctttattatactctcgaatgtcctcaaccgtgaaggagaaggaagcgacgaag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21482826 |
aggaatgacggtatcttgtggtgcaagaaagaagatgactccatcggctttattataatcttgaatgtcctcaaccgtgaaggagaaggaagcgacgaag |
21482727 |
T |
|
| Q |
310 |
ctagcaacatgtccagtagtactatcccaaataggcactggatttgaatacaacactcgtccaatattaggcttagaagggttggtgagtgccattatcc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21482726 |
ctagcaacatgtccagtagtactatcccaaataggcactggatttgaatacaacacccgtccaatattaggcttagaagggttggtgagtgccattatcc |
21482627 |
T |
|
| Q |
410 |
catttgaaaaaatctcagtactaccttgcatgattaaatcagattgacctgaggtgaacttttgaaagtcgaaggaagttgttttctgagaggtcactgg |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21482626 |
catttgaaaaaatctcagtactaccttgcatgattaaatcagattgacctgaggtgaatttttgaaagtcgaaggaagttgttttctgagaggtcactgg |
21482527 |
T |
|
| Q |
510 |
ttcagtagttgccagcaagagagcaactattactgaaacagaaagaaaataaaatggtaattttgaagacatgatgatactcataat |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21482526 |
ttcagtagttgccagcaagagagcaactattactgaaacagaaagaaaataaaatggtaattttgaagacatgatgatactcataat |
21482440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 7 - 596
Target Start/End: Complemental strand, 21493181 - 21492592
Alignment:
| Q |
7 |
tagattatacttactttgactaatgacccattcaccctgttccatggtgttgtcctggaggaaattacagagttaacatcaattccaatatgtggatact |
106 |
Q |
| |
|
||||||||| |||||||||||||||||||| | ||| | ||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21493181 |
tagattatatttactttgactaatgacccacttaccttattccatgttgttgtcctgcgggaaattaaagagttaacatcaattccaatatgtggatact |
21493082 |
T |
|
| Q |
107 |
tgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcgcatcaactactccgagatttgcacctccagagtt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||| |
|
|
| T |
21493081 |
tgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcacatcaactactccgagatatttacctccagagtt |
21492982 |
T |
|
| Q |
207 |
gggaggaatgacggtatcttgtggtgcaagaaagaagatgattccatcggctttattatactctcgaatgtcctcaaccgtgaaggagaaggaagcgacg |
306 |
Q |
| |
|
||||||||||||||| || |||| |||||||||||||||||||||||||||| |||| || || |||||||| ||||||||||||||||| | |
|
|
| T |
21492981 |
gggaggaatgacggtgtcatgtgatgcaagaaagaagatgattccatcggctggcatataaccttgataatcctcaacgacgaaggagaaggaagcgatg |
21492882 |
T |
|
| Q |
307 |
aagctagcaacatgtccagtagtactatcccaaataggcactggatttgaatacaacactcgtccaatattaggcttagaagggttggtgagtgccatta |
406 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||| | ||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||| |
|
|
| T |
21492881 |
aagctagcaacatgtccggtagtacgatcccaaataggcaccgaatttgaatacaacacccgtccagtattagggttagttgggttggtgagtgccatta |
21492782 |
T |
|
| Q |
407 |
tcccatttgaaaaaatctcagtactaccttgcatgattaaatcagattgacctgaggtgaacttttgaaagtcgaaggaagttgttttctgagaggtcac |
506 |
Q |
| |
|
|||||||| |||||| | |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21492781 |
ccccatttggtaaaatcgcggtactaccttgcatgattaaatcagattgaccagaagtgaagttttgaaagtcgaaggaagttgttttctgagaggtcac |
21492682 |
T |
|
| Q |
507 |
tggttcagtagttgccagcaagagagcaactattactgaaacagaaagaaaataaaatggtaattttgaagacatgatgatactcataat |
596 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
21492681 |
tggttcagtagttgccagcatgagagcaactattattgaaacagaaagaaaagaagatggtaattttgaagacatgatgatactcataat |
21492592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 596
Target Start/End: Complemental strand, 21489374 - 21488779
Alignment:
| Q |
7 |
tagattatacttactttgactaatgacccattcaccctgttccatggtgttgtcctggaggaaattacagagttaacatcaattccaatatgtggatact |
106 |
Q |
| |
|
||||||||||||||||| || ||||||||| |||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||| ||| | |
|
|
| T |
21489374 |
tagattatacttactttcaccaatgacccactcaccctgttccatggtgttgtactggatgatattactgagttaacatcaattccaatatgtgcataat |
21489275 |
T |
|
| Q |
107 |
tgggatcatac------tgattggcataagagtcaaactctacaccaacaaattgattgaaagcattttgcgcatcaactactccgagatttgcacctcc |
200 |
Q |
| |
|
|||||||| || | |||||||| | |||||||| |||||||||||||||||||||||||||| | |||||||||||||||| |||| ||| | |
|
|
| T |
21489274 |
tgggatcaaacactaacttattggcatgactatcaaactcgacaccaacaaattgattgaaagcatttttcccatcaactactccgagttttgaacccac |
21489175 |
T |
|
| Q |
201 |
agagttgggaggaatgacggtatcttgtggtgcaagaaagaagatgattccatcggctttattatactctcgaatgtcctcaaccgtgaaggagaaggaa |
300 |
Q |
| |
|
||||||| ||||||| ||||| ||||||||||||||||||||||||| ||||||||||| ||||| || || |||||||||||||||| |||||| |
|
|
| T |
21489174 |
agagttgtgaggaattacggtgtcttgtggtgcaagaaagaagatgagtccatcggcttgtttataaccttgataatcctcaaccgtgaaggtaaaggaa |
21489075 |
T |
|
| Q |
301 |
gcgacgaagctagcaacatgtccagtagtactatcccaaataggcactggatttgaatacaacactcgtccaatattaggcttagaagggttggtgagtg |
400 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| || | | |||||| ||||||| || | |
|
|
| T |
21489074 |
gtaacgaagctagcgacatgtccagtagtactatcccaaatagtcactggatttgaatacaacacccgtccagtactttgtttagaaaggttggttaggg |
21488975 |
T |
|
| Q |
401 |
ccattatcccatttgaaaaaatctcagtactaccttgcatgattaaatcagattgacctgaggtgaacttttgaaagtcgaaggaagttgttttctgaga |
500 |
Q |
| |
|
|||||| |||||||| |||||| | |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21488974 |
ccattaccccatttggtaaaatcgcggtactaccttgcatgattaaatcagattgaccagaagtgaaattttgaaagtcgaaggaagttgttttctgaga |
21488875 |
T |
|
| Q |
501 |
ggtcactggttcagtagttgccagcaagagagcaactattactgaaacagaaagaaaataaaatggtaattttgaagacatgatgatactcataat |
596 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
21488874 |
ggtcactagttcagtagttgccagcaagagagcaactattactgaaacagaaagaaaagaagatggtaattttgaagacatgatgatactcataat |
21488779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 244
Target Start/End: Original strand, 8496011 - 8496188
Alignment:
| Q |
67 |
gaaattacagagttaacatcaattccaatatgtggatacttgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagcat |
166 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||| ||||||||| | ||||| |||| |||||||||||||||||||||||||||| ||| | |
|
|
| T |
8496011 |
gaaattaaagagttgacatcgattccaatatgtctcgtattgggatcaaaactattgggataaaggtcaaactctacaccaacaaattgattgtaagaac |
8496110 |
T |
|
| Q |
167 |
tttgcgcatcaactactccgagatttgcacctccagagttgggaggaatgacggtatcttgtggtgcaagaaagaaga |
244 |
Q |
| |
|
||| | |||||||||||| |||| | || | | |||||||| ||||| || || ||||||||||||| |||||||| |
|
|
| T |
8496111 |
tttttgaatcaactactccaagatgtagactttctgagttgggtggaatcacagtgtcttgtggtgcaataaagaaga |
8496188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 75 - 167
Target Start/End: Original strand, 41047260 - 41047352
Alignment:
| Q |
75 |
agagttaacatcaattccaatatgtggatacttgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagcatt |
167 |
Q |
| |
|
|||||| |||||||||||||||||| |||| |||||| | ||||||||||| ||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
41047260 |
agagttgacatcaattccaatatgttgatatgggggatcccatgtattggcataagtgtcaaactctacaccaacaaatttattaaaagcatt |
41047352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 41037869 - 41037747
Alignment:
| Q |
132 |
gtcaaactctacaccaacaaattgattgaaagcattttgcgcatcaactactccgagatttgcacctccagagttgggaggaatgacggtatcttgtggt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| | | |||||||||||| | || | || | | || ||||| ||||| || || ||||||||| |
|
|
| T |
41037869 |
gtcaaactctacaccaacaaattgattgtaagcattctttgaatcaactactccaaaatattgactttctgaattgggtggaatcacagtgtcttgtggt |
41037770 |
T |
|
| Q |
232 |
gcaagaaagaagatgattccatc |
254 |
Q |
| |
|
|||| ||||||||| | |||||| |
|
|
| T |
41037769 |
gcaataaagaagatcaatccatc |
41037747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 67 - 244
Target Start/End: Complemental strand, 41066124 - 41065947
Alignment:
| Q |
67 |
gaaattacagagttaacatcaattccaatatgtggatacttgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaaagcat |
166 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||| ||||||||| | ||||| |||| |||||||||||||||||||||||||||| ||| || |
|
|
| T |
41066124 |
gaaattaaagagttgacatcgattccaatatgtttcgtattgggatcaaaactattgggataaaggtcaaactctacaccaacaaattgattgtaagtat |
41066025 |
T |
|
| Q |
167 |
tttgcgcatcaactactccgagatttgcacctccagagttgggaggaatgacggtatcttgtggtgcaagaaagaaga |
244 |
Q |
| |
|
||| | |||||||||||| |||| | || | | |||||||| ||||| || ||||||||||||| |||||||| |
|
|
| T |
41066024 |
tttttgaatcaactactccaagatattgactttctgagttgggtggaatcttagtgtcttgtggtgcaataaagaaga |
41065947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 254
Target Start/End: Complemental strand, 41043911 - 41043789
Alignment:
| Q |
132 |
gtcaaactctacaccaacaaattgattgaaagcattttgcgcatcaactactccgagatttgcacctccagagttgggaggaatgacggtatcttgtggt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||| | | ||||| | |||| ||| ||||| || || ||||||||| |
|
|
| T |
41043911 |
gtcaaactctacaccaacaaattgattgtaagcattttctatatcaactactccaaaacgtgcacttgttgagtggggtggaatcacagtgtcttgtggt |
41043812 |
T |
|
| Q |
232 |
gcaagaaagaagatgattccatc |
254 |
Q |
| |
|
|||| ||| ||||| | |||||| |
|
|
| T |
41043811 |
gcaataaaaaagatcactccatc |
41043789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 167
Target Start/End: Complemental strand, 41074145 - 41074111
Alignment:
| Q |
133 |
tcaaactctacaccaacaaattgattgaaagcatt |
167 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41074145 |
tcaaactctacaccaacaaattgattgtaagcatt |
41074111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 41089248 - 41089212
Alignment:
| Q |
133 |
tcaaactctacaccaacaaattgattgaaagcatttt |
169 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
41089248 |
tcaaactctacaccaataaattgattgaatgcatttt |
41089212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0684 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0684
Description:
Target: scaffold0684; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 254
Target Start/End: Complemental strand, 3299 - 3107
Alignment:
| Q |
62 |
tggaggaaattacagagttaacatcaattccaatatgtggatacttgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaa |
161 |
Q |
| |
|
|||| ||||| | |||||| ||||||||||||||||| | ||| | ||||| | | |||| ||||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
3299 |
tggatgaaatcaaagagttgacatcaattccaatatgagcataatcaggatcccattcattgacataattgtcaaattctacaccaacaaatcgattgaa |
3200 |
T |
|
| Q |
162 |
agcattttgcgcatcaactactccgagatttgcacctccagagttgggaggaatgacggtatcttgtggtgcaagaaagaagatgattccatc |
254 |
Q |
| |
|
|||| | | | |||||||||||| |||||| |||| | | |||| |||||| || ||| | ||||||||| ||||||||| | |||||| |
|
|
| T |
3199 |
agcagtattaggatcaactactccaagatttccacccgctgcgttgttaggaattacactatttggtggtgcaataaagaagataagtccatc |
3107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 254
Target Start/End: Original strand, 4819 - 5011
Alignment:
| Q |
62 |
tggaggaaattacagagttaacatcaattccaatatgtggatacttgggatcatactgattggcataagagtcaaactctacaccaacaaattgattgaa |
161 |
Q |
| |
|
|||| ||||| | |||||| ||||||||||||||||| | ||| | ||||| | | |||| ||||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
4819 |
tggatgaaatcaaagagttgacatcaattccaatatgagcataatcaggatcccattcattgacataattgtcaaattctacaccaacaaatcgattgaa |
4918 |
T |
|
| Q |
162 |
agcattttgcgcatcaactactccgagatttgcacctccagagttgggaggaatgacggtatcttgtggtgcaagaaagaagatgattccatc |
254 |
Q |
| |
|
|||| | | | |||||||||||| |||||| |||| | | |||| |||||| || ||| | ||||||||| ||||||||| | |||||| |
|
|
| T |
4919 |
agcagtattaggatcaactactccaagatttccacccgctgcgttgttaggaattacactatttggtggtgcaataaagaagataagtccatc |
5011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University