View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19355_high_4 (Length: 415)
Name: NF19355_high_4
Description: NF19355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19355_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 151 - 391
Target Start/End: Original strand, 3331666 - 3331906
Alignment:
| Q |
151 |
cctcatcatcgaattccctagcttccaattccttccttcttgcaacatttgttcccaacaatgatagctttgcaataatatcatcatgatcaatacggag |
250 |
Q |
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| T |
3331666 |
cctcatcatcgaattccctagcttccaattccttccttcttgcaacatttgttcccaacaatgatagctttgcaataatgtcatcatgatcaatacggag |
3331765 |
T |
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| Q |
251 |
aacgcccggttggccagaaattatcagaaggcatctgaccgagaagattaggattaagattaggattagaattaggaggaggcatagcttgaaaaagtgg |
350 |
Q |
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| T |
3331766 |
aacgcccggttggccagaaattatcagaaggcatctgaccgagaagattaggattaagattaggattagaattaggaggatgcatagcttgaaaaagtgg |
3331865 |
T |
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| Q |
351 |
agcagttgaatctcctaaaagctgttgttgttgttgctgaa |
391 |
Q |
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| T |
3331866 |
agcagttgaatctcctaaaagctgttgttgttgttgctgaa |
3331906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 3331522 - 3331594
Alignment:
| Q |
7 |
tagataatactaataaggatacatcaatttaattacagtctcaaattcaacatacatcaactcacctagaacc |
79 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3331522 |
tagataataataataaggatacatcaatttaattacagtctcaaattcagcatacatcaactcacctagaacc |
3331594 |
T |
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