View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19355_high_6 (Length: 338)
Name: NF19355_high_6
Description: NF19355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19355_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 60 - 318
Target Start/End: Original strand, 8994203 - 8994461
Alignment:
| Q |
60 |
acgcagattgttcctgttcttctcaaaaccagatactgatgtttccatgggcaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaac |
159 |
Q |
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| T |
8994203 |
acgcagattgttcctattcttctcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaa |
8994302 |
T |
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| Q |
160 |
tcagggattctctctcatgttgtttctgtttctgctgcggttgtggataactgcctcctcaaccttgataattatgatgttagtgcttccatcaacgatg |
259 |
Q |
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| T |
8994303 |
tcagggattctctctcgtgttgtttctgtttctgctgcggttgtggataactgcctcctcaaccttgatgattatgatgttagtgcttcaatcaatgatg |
8994402 |
T |
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| Q |
260 |
aaaatactaattatgttaaaaaggagcatttgattgatgttgactattcagttcttgtg |
318 |
Q |
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| T |
8994403 |
aaaatactaataatgttaaaaaggagcatttgattgatgttgactattcagttcttgtg |
8994461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 60 - 318
Target Start/End: Original strand, 9028860 - 9029118
Alignment:
| Q |
60 |
acgcagattgttcctgttcttctcaaaaccagatactgatgtttccatgggcaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaac |
159 |
Q |
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| T |
9028860 |
acgcagattgttcctattcttctcaaaaccagatactgatgtttccatgggtaatgatcactttgataatcatgtgtggtttgtggaagctctgaacaaa |
9028959 |
T |
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| Q |
160 |
tcagggattctctctcatgttgtttctgtttctgctgcggttgtggataactgcctcctcaaccttgataattatgatgttagtgcttccatcaacgatg |
259 |
Q |
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| T |
9028960 |
tcagggattctctctcgtgttgtttctgtttctgctgcggttgtggataactgcctcctcaaccttgatgattatgatgttagtgcttcaatcaatgatg |
9029059 |
T |
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| Q |
260 |
aaaatactaattatgttaaaaaggagcatttgattgatgttgactattcagttcttgtg |
318 |
Q |
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| T |
9029060 |
aaaatactaataatgttaaaaaggagcatttgattgatgttgactattcagttcttgtg |
9029118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 263 - 318
Target Start/End: Original strand, 9007172 - 9007227
Alignment:
| Q |
263 |
atactaattatgttaaaaaggagcatttgattgatgttgactattcagttcttgtg |
318 |
Q |
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| T |
9007172 |
atactaataatgttaaaaaggagcatttgattgatgttgactattcagttcttgtg |
9007227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 9019407 - 9019458
Alignment:
| Q |
46 |
ccttctccttctcgacgcagattgttcctgttcttctcaaaaccagatactg |
97 |
Q |
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| T |
9019407 |
ccttccccttctcgactcagattgttcatgttcatctcaaaaccagatactg |
9019458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 22 - 311
Target Start/End: Complemental strand, 44884339 - 44884041
Alignment:
| Q |
22 |
gagtatgatcatttgtcgtcaaacccttctccttc------tcgacgcagattgttcctgttcttctcaaaaccagatactgatgtttccatgggcaatg |
115 |
Q |
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| T |
44884339 |
gagtatgatcgtttgtcttcaaacccttctccttcaccttctcgactcagattgttcctcttcttctcaaaaccagatactgctgtttccatgggaaatg |
44884240 |
T |
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| Q |
116 |
atcactttgataatcatgtgtggtttgtggaagctctgaacaactcagggattctctctcatgttgtttctgtttctgctgcggttgtggataactgcct |
215 |
Q |
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| T |
44884239 |
gtcacttttataatcatgcatggtttgtggaagctctcaacaactcagggattctgtctcgtgttgtttcagattctgcagctgctgttgataactgcct |
44884140 |
T |
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| Q |
216 |
cctcaaccttgataattatgatgttagtgcttccatcaacgatgaaaatac---taattatgttaaaaaggagcatttgattgatgttgactattcagt |
311 |
Q |
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||||||||| ||| |||||||| |||||||||| | || || |||||||| |||| |||||| ||||||||||||||||||||||| |||||||| |
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| T |
44884139 |
cctcaacctcgatgattatgatattagtgcttcaagtaatgacgaaaatactaataataatgttatcaaggagcatttgattgatgttgattattcagt |
44884041 |
T |
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