View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19355_low_1 (Length: 741)
Name: NF19355_low_1
Description: NF19355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19355_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 8e-54; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 607 - 726
Target Start/End: Original strand, 21153251 - 21153370
Alignment:
| Q |
607 |
taaatttcacttacatatctaacattgaattgaaacaacattaataaagtgcattttaattgaaacatcaataagaaattttgaattaaaacattgaaat |
706 |
Q |
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| T |
21153251 |
taaatttcacttacatatctaacattgaactgaaacatcattaataaagtgcattttaattgaaacatcaataagaaattttgaattaaaacattgaaat |
21153350 |
T |
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| Q |
707 |
tcacacgttgaattgaaact |
726 |
Q |
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||||| |||||||||||||| |
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| T |
21153351 |
tcacatgttgaattgaaact |
21153370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 607 - 726
Target Start/End: Original strand, 21160386 - 21160505
Alignment:
| Q |
607 |
taaatttcacttacatatctaacattgaattgaaacaacattaataaagtgcattttaattgaaacatcaataagaaattttgaattaaaacattgaaat |
706 |
Q |
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|||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21160386 |
taaatttcacttacatttctaacattgaactgaaacatcattaataaagtgcattttaattgaaacatcaataagaaattttgaattaaaacattgaaat |
21160485 |
T |
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| Q |
707 |
tcacacgttgaattgaaact |
726 |
Q |
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||||| |||||||||||||| |
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| T |
21160486 |
tcacatgttgaattgaaact |
21160505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 607 - 725
Target Start/End: Original strand, 21164192 - 21164309
Alignment:
| Q |
607 |
taaatttcacttacatatctaacattgaattgaaacaacattaataaagtgcattttaattgaaacatcaataagaaattttgaattaaaacattgaaat |
706 |
Q |
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|||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21164192 |
taaatttcacttacatatctaacattgact-gaaacatcattaataaagtgcattttaattgaaacatcaataagaaattttgaattaaaacattgaaat |
21164290 |
T |
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| Q |
707 |
tcacacgttgaattgaaac |
725 |
Q |
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||||||||||||||||||| |
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| T |
21164291 |
tcacacgttgaattgaaac |
21164309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 21153169 - 21153254
Alignment:
| Q |
5 |
gcaacaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaa |
90 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| |
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| T |
21153169 |
gcaacaaatactaacaaattttttaatacaaataatactacagacaggtacgttaaacacaaagtatgcgaagagtagataataaa |
21153254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 21160304 - 21160389
Alignment:
| Q |
5 |
gcaacaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaa |
90 |
Q |
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| T |
21160304 |
gcaacaaatactaacaaattttttaatacaaataatactacagacaggtacgttaaacacaaagtatgcgaagagtagataataaa |
21160389 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 21164110 - 21164195
Alignment:
| Q |
5 |
gcaacaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaa |
90 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
21164110 |
gcaacaaatactaacaaattttttaatacaaataatactatagacaggtacgttaagcacaaagtatgcgaagagtagataataaa |
21164195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 2717829 - 2717933
Alignment:
| Q |
8 |
acaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaaggataacaaaaagacga |
107 |
Q |
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|||||||||||| | ||||||||| ||||||||| || |||| || |||||||| ||||| ||| |||||||||||| ||||||||||||| || ||| |
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| T |
2717829 |
acaaatactaacta-ttttttaatgcaaataatatcactgacaactatattaagcacaaagtgtgccaagagtagataaaaaaggataacaaagaggcga |
2717927 |
T |
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| Q |
108 |
tacaat |
113 |
Q |
| |
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||||| |
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| T |
2717928 |
aacaat |
2717933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 2718025 - 2718070
Alignment:
| Q |
206 |
aaaagaactttacaatctacttctttggctactctacatgcatatc |
251 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2718025 |
aaaaaaactttacaatgtacttctttggctactctacatgcatatc |
2718070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 22343565 - 22343631
Alignment:
| Q |
105 |
cgatacaatgccaaaacgtcacaaaactacagccaccaaaagaacaaacacaacactaccaaaacct |
171 |
Q |
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| T |
22343565 |
cgatacaatgctaaaatggcacaaaacaccaaccaccaaaacaacaaacacaaaactaccaaaacct |
22343631 |
T |
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