View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19355_low_7 (Length: 201)
Name: NF19355_low_7
Description: NF19355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19355_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 9e-66; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 49318124 - 49317954
Alignment:
| Q |
17 |
aagatcaaccttaaattttcaattacattaattatttatttacgaacatacctctaattcaagagtattttagtactttttaagatatcaataatccccc |
116 |
Q |
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| T |
49318124 |
aagatcaaccttaaactttcaattacattaattatttatttacgaacatacctctaattcaagagtattttaatactttttaagatatcaataatccccc |
49318025 |
T |
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| Q |
117 |
ctctcg--nnnnnnncttcttctatttttctcttgcacaaagtatcaaaatatattttatttgttattcat |
185 |
Q |
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| T |
49318024 |
ctcttgttttttcttcttcttctatttttctcttgcacaaagtatcaaaatatattttatttgttattcat |
49317954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 34265695 - 34265657
Alignment:
| Q |
31 |
attttcaattacattaattatttatttacgaacatacct |
69 |
Q |
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| T |
34265695 |
attttcaattacattaattatttctttactaacatacct |
34265657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 21778042 - 21777997
Alignment:
| Q |
30 |
aattttcaattacattaattatttatttacgaacatacctctaatt |
75 |
Q |
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||||||||| | |||||||||||| ||||| ||||||||||||||| |
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| T |
21778042 |
aattttcaacttcattaattatttctttactaacatacctctaatt |
21777997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 40048003 - 40048039
Alignment:
| Q |
31 |
attttcaattacattaattatttatttacgaacatac |
67 |
Q |
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| T |
40048003 |
attttcaactacattaattatttatttactaacatac |
40048039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 21522978 - 21522941
Alignment:
| Q |
31 |
attttcaattacattaattatttatttacgaacatacc |
68 |
Q |
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|||||||||||||||||||||||||||| |||||||| |
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| T |
21522978 |
attttcaattacattaattatttatttatcaacatacc |
21522941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 28566223 - 28566259
Alignment:
| Q |
31 |
attttcaattacattaattatttatttacgaacatac |
67 |
Q |
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|||||||| |||||||||||||||||||| ||||||| |
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| T |
28566223 |
attttcaaatacattaattatttatttactaacatac |
28566259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 26544576 - 26544604
Alignment:
| Q |
31 |
attttcaattacattaattatttatttac |
59 |
Q |
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| T |
26544576 |
attttcaattacattaattatttatttac |
26544604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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