View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19356_low_1 (Length: 598)
Name: NF19356_low_1
Description: NF19356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19356_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 3 - 563
Target Start/End: Original strand, 44546361 - 44546921
Alignment:
| Q |
3 |
cttcttcacaaattttacattaacgatccaaaagccgactcagacttgataaagatcacagatggtccatccagtattatacaatctcagctgcttcatc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44546361 |
cttcttcacaaattttacattaacgatccaaaagccgactcagacttgataaagatcacagatggtccatccagtattatacaatctcagctgcttcatc |
44546460 |
T |
|
| Q |
103 |
ttcaggaacaaaacaacgacagcaacagcaatgaagaagaaaatgaacgacataggtttttaatgaagcatatgaagcgtcatggaaaatctaatgtact |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44546461 |
ttcaggaacaaaacaacgacagcaacagcaatgaagaagaaaatgaacgacataggtttttattgaagcatatgaagcgtcatggaaaatctaatgtact |
44546560 |
T |
|
| Q |
203 |
tgagatagttgaggatgatgtgtatgtaaaatatnnnnnnnatgaatcatcatgtgcaacaaagaaaaagggtaaacttggtggaaagagacgtaatgtt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44546561 |
tgagatagttgaggatgatgtgtatgtaaaatatgggggggatgaatcatcatgtgcaacaaagaaaaaggataaacttggtggaaagagacgtaatgtt |
44546660 |
T |
|
| Q |
303 |
caaacaaatcgtgtggtttcaaagaagggtggtaggggtaggaaattgaaaggtgcaacaaaactctctggctctgctgctaggaaacgtgggattaaca |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44546661 |
caaacaaatcgtgtggtttcaaagaagggtggtaggggtaggaaattgaaaggtgcaacaaaactctctggctctgctgctaggaaacgtgggattaaca |
44546760 |
T |
|
| Q |
403 |
ataagaaaagtgatgtggcttcaaaaggaaataaaaatgctggtaaaaggaaaagaggacgtccgataaagattccagaaaagaacgatgtgaatgagga |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44546761 |
ataagaaaagtgatgtggcttcaaaaggaaataaaaatgctggtaaaaggaaaagaggacgtccgataaagattccagaaaagaacgatgtgaatgagga |
44546860 |
T |
|
| Q |
503 |
agaaggtgtttcagctgtgaaagctacatttgttgatgaaagtgtgaaaaaggagattcaa |
563 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44546861 |
agaaggtgtttcagctgtgaaagctacatttgttgatgaaagtgtgaaaaaggagattcaa |
44546921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University