View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19356_low_2 (Length: 458)
Name: NF19356_low_2
Description: NF19356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19356_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 53089528 - 53089063
Alignment:
| Q |
1 |
agaaagctaaagaagaaagcatgttgatggcacattgtatgtcatctcttcaggaagaactcgaacgcacgaagcaagagctcgaacaattgaagcaacg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53089528 |
agaaagctaaagaagaaagcatgttgatggcacattgtatgtcatctcttcaggaagaactcgaacgcacgaagcaagagctcgaacaattgaagcaacg |
53089429 |
T |
|
| Q |
101 |
tgaaactgaaaaacatcaagtggaatcatcagaaactgaagacgtgaagtttgttgagaatttaacaacctttgaagtgaaaagttcaagatttgatgaa |
200 |
Q |
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| T |
53089428 |
tgaaactgaaaaacatcaagtggaatcatcagaaactgaagacgtgaagtttgttgagaatttaacaacctttgaagtgaaaagttcaagatttgatgaa |
53089329 |
T |
|
| Q |
201 |
gaattaatgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctcaaggtgttgagaagttggaaa |
300 |
Q |
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| T |
53089328 |
gaattaatgatggagtttcaaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctcaaggtgttgagaagttggaaa |
53089229 |
T |
|
| Q |
301 |
ggcacccttctcttaggaagaagaagaagaagtcattgattccacttatcggaggtattttttcaaggaaaaagggaactagccaagaagttccatg--- |
397 |
Q |
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| T |
53089228 |
ggcacccttctcttaggaagaagaagaagaagtcattgattccacttataggaggtattttttcaaggaaaaagggaactagccaagaagttccatgatg |
53089129 |
T |
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| Q |
398 |
--------------atgaattttagcgagtataagtatgctatatgcattacattaccagaataat |
449 |
Q |
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| T |
53089128 |
agtgacgagtttgtatgaattttagcgagtataagtatgctatatgcatcacattaccagaataat |
53089063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 119 - 403
Target Start/End: Complemental strand, 14334119 - 14333826
Alignment:
| Q |
119 |
agtggaatcatcagaaactgaagacgtgaagtttgttgagaatttaacaacctttgaagtgaaaagttcaagatttgatgaagaattaatgatggagttt |
218 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
14334119 |
agtgaaatcatcagaaactgaagacgtgaagtttgttgagaatttaacaacctttgaactgaaaagttcaagatttgatgaagaattaatgatggaattt |
14334020 |
T |
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| Q |
219 |
caaaagaaaaggtatgtgacgttcgcgaatccaccgtctgtttctcatgtgatgttacctca---------aggtgttgagaagttggaaaggcaccctt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14334019 |
caaaagaaaaggtatgtgacgttcgcgaatccaccgtcagtttctcatgtcatgttacctcaaggtcatcaaggtgttgagaagttggaaaggcaccctt |
14333920 |
T |
|
| Q |
310 |
ctcttaggaagaagaagaagaagtcattgattccacttatcggaggtattttttcaaggaaaaagggaactagccaagaagttccatgatgaat |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
14333919 |
ctcttaggaagaagaagaagaagtcattgattccacttattggaggcatattttctaggaaaaagggaactaaccaagaagttccatgatgaat |
14333826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 449
Target Start/End: Complemental strand, 14333814 - 14333763
Alignment:
| Q |
398 |
atgaattttagcgagtataagtatgctatatgcattacattaccagaataat |
449 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
14333814 |
atgaattttagcgagtataagtatgcttcatgcattacattaccagattaat |
14333763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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