View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19356_low_4 (Length: 340)
Name: NF19356_low_4
Description: NF19356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19356_low_4 |
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| [»] scaffold0341 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 37205326 - 37205561
Alignment:
| Q |
14 |
cataggactcatcatgcctaacaacatcaacctcgctattccaattcaacaaagaatcaccaccttcaaacccacgcggagggctcataataagagcctt |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37205326 |
cataagactcatcatgcctaacaacatcaacctcgctattccaattcaacaaagaatcaccaccttcaaacccacgcggagggctcataataagagcctt |
37205425 |
T |
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| Q |
114 |
atcctcctttttaagaagaccctcatcacccaaatcatgaagaatggaattcaaaacctcaacattgatggaaacaaaagttgaagttgaagcattaaca |
213 |
Q |
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| T |
37205426 |
atcctcctttttaagaagaccctcatcacccaaatcatgaagaatggaattcaaaacctcaacattgatggaaacaaaagttgaagttgaagcattaaca |
37205525 |
T |
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| Q |
214 |
acaatagcatcaaatccagaaacaactaaccctttt |
249 |
Q |
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| T |
37205526 |
acaatagcatcaaatccagaaacaactaaccctttt |
37205561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 37 - 182
Target Start/End: Original strand, 3692 - 3835
Alignment:
| Q |
37 |
acatcaacctcgctattccaattcaacaaagaatcaccaccttcaaacccacgcggagggctcataataagagccttatcctcctttttaagaagaccct |
136 |
Q |
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| T |
3692 |
acatcaacctcactgtttcaattcaacaaagaatcatcaccttcaaatccatctaaagtgctcataataagagccttatcctcctttttaaga--accct |
3789 |
T |
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| Q |
137 |
catcacccaaatcatgaagaatggaattcaaaacctcaacattgat |
182 |
Q |
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| T |
3790 |
cgttacccaaatcatgaacaatggaattcaaaaccttaacattgat |
3835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 37 - 182
Target Start/End: Original strand, 11348 - 11491
Alignment:
| Q |
37 |
acatcaacctcgctattccaattcaacaaagaatcaccaccttcaaacccacgcggagggctcataataagagccttatcctcctttttaagaagaccct |
136 |
Q |
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| T |
11348 |
acatcaacctcactgtttcaattcaacaaagaatcatcaccttcaaatccatctaaagtgctcataataagagccttatcctcctttttaaga--accct |
11445 |
T |
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| Q |
137 |
catcacccaaatcatgaagaatggaattcaaaacctcaacattgat |
182 |
Q |
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| T |
11446 |
cgttacccaaatcatgaacaatggaattcaaaaccttaacattgat |
11491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 37 - 182
Target Start/End: Original strand, 6509668 - 6509811
Alignment:
| Q |
37 |
acatcaacctcgctattccaattcaacaaagaatcaccaccttcaaacccacgcggagggctcataataagagccttatcctcctttttaagaagaccct |
136 |
Q |
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||||||||||| || || |||||||||||||||||| |||||||||| ||| || |||||||||||||||||||||||||||||||||| ||||| |
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| T |
6509668 |
acatcaacctcactgtttcaattcaacaaagaatcatcaccttcaaatccatctaaagtgctcataataagagccttatcctcctttttaaga--accct |
6509765 |
T |
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| Q |
137 |
catcacccaaatcatgaagaatggaattcaaaacctcaacattgat |
182 |
Q |
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| T |
6509766 |
cgttacccaaatcatgaacaatggaattcaaaaccttaacattgat |
6509811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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