View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19356_low_5 (Length: 330)
Name: NF19356_low_5
Description: NF19356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19356_low_5 |
 | |
|
| [»] scaffold0491 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 1557253 - 1557571
Alignment:
| Q |
1 |
agtcgtgctgtgccaaagtcgcaaacactagcctgccactcagagttgagcaatatattgctactagatacatctctatgcactattggagcagtgcaat |
100 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1557253 |
agtcgagctgtgccaaagtcacaaacactagcctgccactcagagttaacaaatatattgctactagatacatctctatgcactattggagcattgcaat |
1557352 |
T |
|
| Q |
101 |
catgatgaagataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaatttcacagcttctacatcatcgaacaagacaga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| |
|
|
| T |
1557353 |
catgatgaagataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaattccacagcttccacatcatcatacaagacaga |
1557452 |
T |
|
| Q |
201 |
gaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttct |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1557453 |
gaacaagcttcctttctccatgtattgatatatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatgtttgtgctttatttct |
1557552 |
T |
|
| Q |
301 |
gataatattctcacttcat |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1557553 |
gataatattctcacttcat |
1557571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 1088971 - 1088653
Alignment:
| Q |
1 |
agtcgtgctgtgccaaagtcgcaaacactagcctgccactcagagttgagcaatatattgctactagatacatctctatgcactattggagcagtgcaat |
100 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
1088971 |
agtcgagctgtgccaaagtccgcgacactggcctgccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggagcggtgcaat |
1088872 |
T |
|
| Q |
101 |
catgatgaagataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaatttcacagcttctacatcatcgaacaagacaga |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
1088871 |
caggatgaagataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaattccacagcttctacatcatcatacaagacaga |
1088772 |
T |
|
| Q |
201 |
gaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttct |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1088771 |
gaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttct |
1088672 |
T |
|
| Q |
301 |
gataatattctcacttcat |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1088671 |
gataatattctcacttcat |
1088653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 1604707 - 1604389
Alignment:
| Q |
1 |
agtcgtgctgtgccaaagtcgcaaacactagcctgccactcagagttgagcaatatattgctactagatacatctctatgcactattggagcagtgcaat |
100 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1604707 |
agtcgagctgtgccaaagtcacaaacactagcctgccactcatagtttagcaatatattgctactagatacatctctatgcatgattggagcagtgcaat |
1604608 |
T |
|
| Q |
101 |
catgatgaagataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaatttcacagcttctacatcatcgaacaagacaga |
200 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
1604607 |
catgatgaagatatgaaagagcaaatgcaactcctttaatagtgttaaccctttttctccacttgaattccacggcttctacatcatcatacaagacaga |
1604508 |
T |
|
| Q |
201 |
gaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttct |
300 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1604507 |
gaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttct |
1604408 |
T |
|
| Q |
301 |
gataatattctcacttcat |
319 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
1604407 |
gataatattttcacttcat |
1604389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 1541309 - 1541627
Alignment:
| Q |
1 |
agtcgtgctgtgccaaagtcgcaaacactagcctgccactcagagttgagcaatatattgctactagatacatctctatgcactattggagcagtgcaat |
100 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1541309 |
agtcgagctgtgccaaagtcagacacactagcctgccactcagagtttagcaagatattgctagtagatacatctcaatgcactattggagcagtgcaat |
1541408 |
T |
|
| Q |
101 |
catgatgaagataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaatttcacagcttctacatcatcgaacaagacaga |
200 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
1541409 |
catgatgaagatatgaaagagcaaatgcaactcctttaacagtgttgacccttttcctccacttgaattccacggcttctacatcatcatacaagacaga |
1541508 |
T |
|
| Q |
201 |
gaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttct |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1541509 |
gaataagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcaaaatccataaagcttcacaatatgtcggtgctttatttct |
1541608 |
T |
|
| Q |
301 |
gataatattctcacttcat |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1541609 |
gataatattctcacttcat |
1541627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 1106320 - 1106002
Alignment:
| Q |
1 |
agtcgtgctgtgccaaagtcgcaaacactagcctgccactcagagttgagcaatatattgctactagatacatctctatgcactattggagcagtgcaat |
100 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1106320 |
agtcgagctgtgccaaagtcagcgacactggcctgccactcagagtttagcaagatattgctactagatacatctctatgcacgattggagcagtgcaat |
1106221 |
T |
|
| Q |
101 |
catgatgaagataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaatttcacagcttctacatcatcgaacaagacaga |
200 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||| |||||||||||||| |||||| ||| |
|
|
| T |
1106220 |
catgatgaagatatgaaagagcaaatgcaactcctttaatagtgttaacccttgttctccaattgaattccacggcttctacatcatcatacaagataga |
1106121 |
T |
|
| Q |
201 |
gaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttct |
300 |
Q |
| |
|
||||| ||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1106120 |
gaacaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttct |
1106021 |
T |
|
| Q |
301 |
gataatattctcacttcat |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1106020 |
gataatattctcacttcat |
1106002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 319
Target Start/End: Complemental strand, 1596369 - 1596059
Alignment:
| Q |
9 |
tgtgccaaagtcgcaaacactagcctgccactcagagttgagcaatatattgctactagatacatctctatgcactattggagcagtgcaatcatgatga |
108 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| |||||||| || || ||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
1596369 |
tgtgccaaagtcacaaacactagcatgccattcagagtttagtaagatattgctactagatacatctctatgcactattggagtagtgcattcatgatga |
1596270 |
T |
|
| Q |
109 |
agataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaagc |
208 |
Q |
| |
|
||||| || ||||||||||||| |||||||||||||||||||||| ||||||| ||||||| ||| |||||||||||||| ||||||||||||||| || |
|
|
| T |
1596269 |
agatatgaaagagcaaatgcaattcctttaacagtgttaacccttgttctccacttgaattccacggcttctacatcatcatacaagacagagaacaggc |
1596170 |
T |
|
| Q |
209 |
ttcctctctccatgtattgatagatcaaaaacatgactcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatat |
308 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1596169 |
ttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatat |
1596070 |
T |
|
| Q |
309 |
tctcacttcat |
319 |
Q |
| |
|
||||||||||| |
|
|
| T |
1596069 |
tctcacttcat |
1596059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 319
Target Start/End: Original strand, 1550549 - 1550861
Alignment:
| Q |
7 |
gctgtgccaaagtcgcaaacactagcctgccactcagagttgagcaatatattgctactagatacatctctatgcactattggagcagtgcaatcatgat |
106 |
Q |
| |
|
|||||||||||||| | |||||||||| |||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1550549 |
gctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctagtagatacatctctatgcactattggagcagtacaatcatgat |
1550648 |
T |
|
| Q |
107 |
gaagataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaa |
206 |
Q |
| |
|
||||||| || ||||||||||||| ||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| || ||||||||| |||||| |
|
|
| T |
1550649 |
gaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccacagcttctacatcgtcatacaagacagtgaacaa |
1550748 |
T |
|
| Q |
207 |
gcttcctctctccatgtattgatagatcaaaaacatgactcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataat |
306 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||| |||||||||||||| ||| |
|
|
| T |
1550749 |
gcttcctctctccatgtactgatagatcaaaaacatgattctcttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctgtcaat |
1550848 |
T |
|
| Q |
307 |
attctcacttcat |
319 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1550849 |
attctcacttcat |
1550861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 3955301 - 3955619
Alignment:
| Q |
1 |
agtcgtgctgtgccaaagtcgcaaacactagcctgccactcagagttgagcaatatattgctactagatacatctctatgcactattggagcagtgcaat |
100 |
Q |
| |
|
||||| ||| |||||||||| ||||||||| |||||| || ||||| ||||| ||||||||| ||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
3955301 |
agtcgagctatgccaaagtcagaaacactaggctgccattctgagtttagcaagatattgctagtagatacatctctatgcactattggagaggtgaaat |
3955400 |
T |
|
| Q |
101 |
catgatgaagataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaatttcacagcttctacatcatcgaacaagacaga |
200 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| ||||||| |||||| | ||||| |||||||| |||||| || |
|
|
| T |
3955401 |
catgatgaagatatgatagagcagatgcaactcctttaatggtgttaacccttttcctccaatcgaattttatggcttcgacatcatcatgcaagacgga |
3955500 |
T |
|
| Q |
201 |
gaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttct |
300 |
Q |
| |
|
||||||||||||| | ||||| || ||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
3955501 |
gaacaagcttcctttttccatatactgatagatcaaaaacataactcttttatgcaaacaaaatccataaagcttcacaatatttctgtgctttatttct |
3955600 |
T |
|
| Q |
301 |
gataatattctcacttcat |
319 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
3955601 |
gataatattttcacttcat |
3955619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 2321513 - 2321195
Alignment:
| Q |
1 |
agtcgtgctgtgccaaagtcgcaaacactagcctgccactcagagttgagcaatatattgctactagatacatctctatgcactattggagcagtgcaat |
100 |
Q |
| |
|
||||| ||||| |||||||| ||||||||| |||||||||||||| ||||| |||||||| ||||||||||||| ||||||||||||| || |||| |
|
|
| T |
2321513 |
agtcgagctgttccaaagtcagaaacactaggatgccactcagagtttagcaagatattgctggtagatacatctctgtgcactattggaggggtacaat |
2321414 |
T |
|
| Q |
101 |
catgatgaagataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaatttcacagcttctacatcatcgaacaagacaga |
200 |
Q |
| |
|
||||||||||||| ||||| |||| ||||| ||||||||| |||| |||||||||||||||||||| || || ||| ||||||| ||||||| || |
|
|
| T |
2321413 |
catgatgaagatatgataggccaaaggcaacccctttaacaacattaagcctttttctccaattgaattccatggcctctgcatcatcatacaagacgga |
2321314 |
T |
|
| Q |
201 |
gaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttct |
300 |
Q |
| |
|
|||||| ||||||||||||||||| || |||||||||||||||| ||||||||||||||| |||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
2321313 |
gaacaaacttcctctctccatgtaatggtagatcaaaaacatgattcttttgtgcaagcaaaatccataaagcttcacaatatttcggtgctttatttct |
2321214 |
T |
|
| Q |
301 |
gataatattctcacttcat |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2321213 |
gataatattctcacttcat |
2321195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 9 - 319
Target Start/End: Complemental strand, 2330003 - 2329693
Alignment:
| Q |
9 |
tgtgccaaagtcgcaaacactagcctgccactcagagttgagcaatatattgctactagatacatctctatgcactattggagcagtgcaatcatgatga |
108 |
Q |
| |
|
|||||||||||| ||||||||| || |||||||||||| ||||| ||||||| ||||||||||||||||||| || | || ||||||||||||||| |
|
|
| T |
2330003 |
tgtgccaaagtcagaaacactaggcttccactcagagtttagcaagatattgcccgtagatacatctctatgcacaatggcaggggtgcaatcatgatga |
2329904 |
T |
|
| Q |
109 |
agataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaagc |
208 |
Q |
| |
|
||||| |||||| |||||||||| ||||||| | ||||||||||||||||||||||||| ||| ||||| | ||||| |||||||||||||||||| |
|
|
| T |
2329903 |
agatatgatagaccaaatgcaacacctttaataacattaaccctttttctccaattgaattccacggcttcaccttcatcatacaagacagagaacaagc |
2329804 |
T |
|
| Q |
209 |
ttcctctctccatgtattgatagatcaaaaacatgactcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatat |
308 |
Q |
| |
|
| ||| |||||||||| | |||||||||||||||| |||| |||| | |||||||||||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
2329803 |
tacctttctccatgtactcgtagatcaaaaacatgattcttctgtggagacagaatccataaagcttcacgatatgccggtgctttatatctgataatat |
2329704 |
T |
|
| Q |
309 |
tctcacttcat |
319 |
Q |
| |
|
||||||||||| |
|
|
| T |
2329703 |
tctcacttcat |
2329693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 9 - 319
Target Start/End: Complemental strand, 2337902 - 2337592
Alignment:
| Q |
9 |
tgtgccaaagtcgcaaacactagcctgccactcagagttgagcaatatattgctactagatacatctctatgcactattggagcagtgcaatcatgatga |
108 |
Q |
| |
|
|||||||||||| ||||||||| || |||||| ||||| ||||| ||||||| | ||||||||||||||||||| || | || ||||||||||||||| |
|
|
| T |
2337902 |
tgtgccaaagtcagaaacactaggcttccactccgagtttagcaagatattgccagtagatacatctctatgcacaatggcaggggtgcaatcatgatga |
2337803 |
T |
|
| Q |
109 |
agataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaagc |
208 |
Q |
| |
|
||||| |||||| |||||||||| ||||||| | ||||||||||||||||||||||||| ||| ||||| || ||||| ||||| |||||||||||| |
|
|
| T |
2337802 |
agatatgatagaccaaatgcaacacctttaataacattaaccctttttctccaattgaattccacggcttcaacttcatcatacaagccagagaacaagc |
2337703 |
T |
|
| Q |
209 |
ttcctctctccatgtattgatagatcaaaaacatgactcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatat |
308 |
Q |
| |
|
| ||| |||||||||| | |||||||||||||||| |||| |||| | |||||||||||||||||||| |||||| ||||||||| ||||||||||| |
|
|
| T |
2337702 |
tacctttctccatgtactcgtagatcaaaaacatgattcttctgtggagacagaatccataaagcttcacgatatgtcggtgctttatatctgataatat |
2337603 |
T |
|
| Q |
309 |
tctcacttcat |
319 |
Q |
| |
|
| ||||||||| |
|
|
| T |
2337602 |
tttcacttcat |
2337592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 151 - 319
Target Start/End: Complemental strand, 30792477 - 30792308
Alignment:
| Q |
151 |
ctttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaagcttcctctctccatgtattgatagatcaaaaacatgactc-tt |
249 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||| ||| ||||| |||||| | |||| | |||||||||||||||||||| || || || |
|
|
| T |
30792477 |
ctttttctccaattgaatttcacaacttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattcttt |
30792378 |
T |
|
| Q |
250 |
ttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatattctcacttcat |
319 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| | |||||||||||| |||||||||||||||||||| |
|
|
| T |
30792377 |
ttgtgcaagcagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcat |
30792308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 3852811 - 3852661
Alignment:
| Q |
13 |
ccaaagtcgcaaacactagcctgccactcagagttgagcaatatattgctactagatacatctctatgcactattggagcagtgcaatcatgatgaagat |
112 |
Q |
| |
|
|||||||| ||||||||| |||||| || ||||| || || ||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
3852811 |
ccaaagtcagaaacactaggctgccattccgagtttagaaagatattgctagtagatacatctctatgcactattggaaaggtgaaatcatgatgaagat |
3852712 |
T |
|
| Q |
113 |
aagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaat |
163 |
Q |
| |
|
| ||||||||| ||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
3852711 |
atgatagagcagatgcaactcctttaacaatgttaatcctttttctccaat |
3852661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 151 - 319
Target Start/End: Original strand, 9532045 - 9532212
Alignment:
| Q |
151 |
ctttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttt |
250 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| |||| | |||||||| |||||| |||| | ||||||||||||||||||||||| ||||| |
|
|
| T |
9532045 |
ctttttctccaattgaattccacaacttctacatcatcatacaaaaacgagaacaaacttcctttctc-acgtattgatagatcaaaaacatgattcttt |
9532143 |
T |
|
| Q |
251 |
tgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatattctcacttcat |
319 |
Q |
| |
|
||| ||| || |||||||||||||| ||||||| | |||| ||||||| | ||||||||||| |||||| |
|
|
| T |
9532144 |
tgtacaatcataatccataaagcttaacaatatttatgtgatttattttttataatattctcgcttcat |
9532212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 18723353 - 18723671
Alignment:
| Q |
1 |
agtcgtgctgtgccaaagtcgcaaacactagcctgccactcagagttgagcaatatattgctactagatacatctctatgcactattggagcagtgcaat |
100 |
Q |
| |
|
||||| |||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18723353 |
agtcgagctgtgccgaagtcacaaacactggcctgccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggagcagtgcaat |
18723452 |
T |
|
| Q |
101 |
catgatgaagataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaatttcacagcttctacatcatcgaacaagacaga |
200 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||| ||||||||| ||||||||||| |||||||||| |||||||||||||| |||||||||| |
|
|
| T |
18723453 |
catgatgaagatatgaaagagcaaatgcaactcctttaatagtgttaactctttttctccacttgaatttcatggcttctacatcatcatacaagacaga |
18723552 |
T |
|
| Q |
201 |
gaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttct |
300 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18723553 |
gaataagcttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcactatatgtttgtgctttatttct |
18723652 |
T |
|
| Q |
301 |
gataatattctcacttcat |
319 |
Q |
| |
|
| ||| ||||||||||||| |
|
|
| T |
18723653 |
gttaaaattctcacttcat |
18723671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 18749005 - 18749323
Alignment:
| Q |
1 |
agtcgtgctgtgccaaagtcgcaaacactagcctgccactcagagttgagcaatatattgctactagatacatctctatgcactattggagcagtgcaat |
100 |
Q |
| |
|
||||| |||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18749005 |
agtcgagctgtgccgaagtcacaaacactggcctgccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggagcagtgcaat |
18749104 |
T |
|
| Q |
101 |
catgatgaagataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaatttcacagcttctacatcatcgaacaagacaga |
200 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||| ||||||||| ||||||||||| ||||||| || |||||||||||||| |||||||||| |
|
|
| T |
18749105 |
catgatgaagatatgaaagagcaaatgcaactcctttaatagtgttaactctttttctccacttgaattccatggcttctacatcatcatacaagacaga |
18749204 |
T |
|
| Q |
201 |
gaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttct |
300 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18749205 |
gaataagcttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttct |
18749304 |
T |
|
| Q |
301 |
gataatattctcacttcat |
319 |
Q |
| |
|
| ||| ||||||||||||| |
|
|
| T |
18749305 |
gttaaaattctcacttcat |
18749323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 18739090 - 18739398
Alignment:
| Q |
11 |
tgccaaagtcgcaaacactagcctgccactcagagttgagcaatatattgctactagatacatctctatgcactattggagcagtgcaatcatgatgaag |
110 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18739090 |
tgccgaagtcacaaacactggcctgccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggagcagtgcaatcatgatgaag |
18739189 |
T |
|
| Q |
111 |
ataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaagctt |
210 |
Q |
| |
|
||| || | |||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||| ||| ||||||||| |||||||||||||||||||| |
|
|
| T |
18739190 |
atatgaaaaagcaaatgcaactcctttaatagtgttaacccttttcctccacttgaattccacgacttttacatcatcatacaagacagagaacaagctt |
18739289 |
T |
|
| Q |
211 |
cctctctccatgtattgatagatcaaaaacatgactcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatattc |
310 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18739290 |
cctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattc |
18739389 |
T |
|
| Q |
311 |
tcacttcat |
319 |
Q |
| |
|
||||||||| |
|
|
| T |
18739390 |
tcacttcat |
18739398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 18744054 - 18744362
Alignment:
| Q |
11 |
tgccaaagtcgcaaacactagcctgccactcagagttgagcaatatattgctactagatacatctctatgcactattggagcagtgcaatcatgatgaag |
110 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18744054 |
tgccgaagtcacaaacactggcctgccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggagcagtgcaatcatgatgaag |
18744153 |
T |
|
| Q |
111 |
ataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaagctt |
210 |
Q |
| |
|
||| || | |||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||| ||| ||||||||| |||||||||||||||||||| |
|
|
| T |
18744154 |
atatgaaaaagcaaatgcaactcctttaatagtgttaacccttttcctccacttgaattccacgacttttacatcatcatacaagacagagaacaagctt |
18744253 |
T |
|
| Q |
211 |
cctctctccatgtattgatagatcaaaaacatgactcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatattc |
310 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
18744254 |
cctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattc |
18744353 |
T |
|
| Q |
311 |
tcacttcat |
319 |
Q |
| |
|
||||||||| |
|
|
| T |
18744354 |
tcacttcat |
18744362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 319
Target Start/End: Original strand, 18732996 - 18733024
Alignment:
| Q |
291 |
ctttatttctgataatattctcacttcat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
18732996 |
ctttatttctgataatattctcacttcat |
18733024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 5846 - 6164
Alignment:
| Q |
1 |
agtcgtgctgtgccaaagtcgcaaacactagcctgccactcagagttgagcaatatattgctactagatacatctctatgcactattggagcagtgcaat |
100 |
Q |
| |
|
||||| |||||||| ||||| |||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5846 |
agtcgagctgtgccgaagtcacaaacactggcctgccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggagcagtgcaat |
5945 |
T |
|
| Q |
101 |
catgatgaagataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaatttcacagcttctacatcatcgaacaagacaga |
200 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||| ||||||||| ||||||||||| ||||||| || |||||||||||||| |||||||||| |
|
|
| T |
5946 |
catgatgaagatatgaaagagcaaatgcaactcctttaatagtgttaactctttttctccacttgaattgcagggcttctacatcatcatacaagacaga |
6045 |
T |
|
| Q |
201 |
gaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttct |
300 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6046 |
gaataagcttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaaaccataaagcttcacgatatgtttgtgctttatttct |
6145 |
T |
|
| Q |
301 |
gataatattctcacttcat |
319 |
Q |
| |
|
| ||| ||||||||||||| |
|
|
| T |
6146 |
gttaaaattctcacttcat |
6164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 969 - 1277
Alignment:
| Q |
11 |
tgccaaagtcgcaaacactagcctgccactcagagttgagcaatatattgctactagatacatctctatgcactattggagcagtgcaatcatgatgaag |
110 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
969 |
tgccgaagtcacaaacactggcctgccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggagcagtgcaatcatgatgaag |
1068 |
T |
|
| Q |
111 |
ataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaagctt |
210 |
Q |
| |
|
||| || | |||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||| ||| ||||||||| |||||||||||||||||||| |
|
|
| T |
1069 |
atatgaaaaagcaaatgcaactcctttaatagtgttaacccttttcctccacttgaattccacgacttttacatcatcatacaagacagagaacaagctt |
1168 |
T |
|
| Q |
211 |
cctctctccatgtattgatagatcaaaaacatgactcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatattc |
310 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1169 |
cctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattc |
1268 |
T |
|
| Q |
311 |
tcacttcat |
319 |
Q |
| |
|
||||||||| |
|
|
| T |
1269 |
tcacttcat |
1277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 151 - 318
Target Start/End: Complemental strand, 19250577 - 19250411
Alignment:
| Q |
151 |
ctttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttt |
250 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| |||| || ||||||||||||| | | || ||||||||||||||||||||||||| ||||| |
|
|
| T |
19250577 |
ctttttctccaattgaattccacaacttctacatcatcatacaaaaccgagaacaagcttcatttttc-atgtattgatagatcaaaaacatgattcttt |
19250479 |
T |
|
| Q |
251 |
tgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatattctcacttca |
318 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | |||| ||||| | ||||||||||||||||||| |
|
|
| T |
19250478 |
tgtgcaagcagaatccataaagcttaacaatatttatgtgttttatatatgataatattctcacttca |
19250411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 151 - 318
Target Start/End: Original strand, 41668784 - 41668951
Alignment:
| Q |
151 |
ctttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttt |
250 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| ||| || |||| || |||||||| ||| || | | ||||||| ||||||| |||||||| | ||||| |
|
|
| T |
41668784 |
ctttttctgcaattgaattccacagcttctaaatcctcatacaaaactgagaacaaactttcttttttcatgtatcgatagattaaaaacattattcttt |
41668883 |
T |
|
| Q |
251 |
tgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatattctcacttca |
318 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| | | |||||||||| | |||||||| |||||||| |
|
|
| T |
41668884 |
tgtgcaagcaaaatccataaagcttaacaatatttatctgctttattttttataatattttcacttca |
41668951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 151 - 318
Target Start/End: Complemental strand, 36620780 - 36620613
Alignment:
| Q |
151 |
ctttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttt |
250 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| ||| || |||| || |||||||| ||| |||| | ||||||||||||||| |||||||||| ||||| |
|
|
| T |
36620780 |
ctttttctgcaattgaattccacagcttctaaatcctcatacaaaaccgagaacaaactttctcttttcatgtattgatagattaaaaacatgattcttt |
36620681 |
T |
|
| Q |
251 |
tgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatattctcacttca |
318 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| | | |||||||||| ||||||||||||||||||| |
|
|
| T |
36620680 |
tgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca |
36620613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 151 - 318
Target Start/End: Original strand, 39102224 - 39102391
Alignment:
| Q |
151 |
ctttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttt |
250 |
Q |
| |
|
|||||||| |||||||||| |||| |||||| ||| || |||| || |||||||| ||| |||| | |||||||||||| || ||||||||| ||||| |
|
|
| T |
39102224 |
ctttttctgcaattgaattccacaacttctaaatcctcatacaaaaccgagaacaaactttctcttttcatgtattgatatattaaaaacatgcttcttt |
39102323 |
T |
|
| Q |
251 |
tgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatattctcacttca |
318 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| | | |||||||||| ||||||||||||||||||| |
|
|
| T |
39102324 |
tgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca |
39102391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 151 - 318
Target Start/End: Original strand, 8873030 - 8873198
Alignment:
| Q |
151 |
ctttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttt |
250 |
Q |
| |
|
|||||||| |||||||||| |||| |||||| ||| || |||| | |||||||| ||| || | | ||||||||||||||| |||||||||| ||||| |
|
|
| T |
8873030 |
ctttttctgcaattgaattccacatcttctaaatcctcatacaaaatcgagaacaaactttcttttttcatgtattgatagattaaaaacatgattcttt |
8873129 |
T |
|
| Q |
251 |
tgtgcaagc-agaatccataaagcttcacaatatgtttgtgctttatttctgataatattctcacttca |
318 |
Q |
| |
|
||||||||| | |||||||||||||| | ||||| | | |||||||||| | ||||||||||||||||| |
|
|
| T |
8873130 |
tgtgcaagcaaaaatccataaagcttaataatatttatctgctttattttttataatattctcacttca |
8873198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 151 - 318
Target Start/End: Original strand, 42977710 - 42977877
Alignment:
| Q |
151 |
ctttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttt |
250 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||| ||| || |||| || |||||||| ||| || | | ||||||||||||||| |||||||||| ||||| |
|
|
| T |
42977710 |
ctttttctgcaattaaattccacagcttctaaatcctcatacaaaaccgagaacaaactttcttttttcatgtattgatagattaaaaacatgattcttt |
42977809 |
T |
|
| Q |
251 |
tgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatattctcacttca |
318 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| | | |||||||||| ||||||||||||||||||| |
|
|
| T |
42977810 |
tgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca |
42977877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 151 - 318
Target Start/End: Original strand, 48712369 - 48712535
Alignment:
| Q |
151 |
ctttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttt |
250 |
Q |
| |
|
|||||||| |||||||||| |||| |||||| ||| || |||| | |||||||| ||| || | | ||||||||||||||| |||| |||| ||||| |
|
|
| T |
48712369 |
ctttttctgcaattgaattccacaacttctaaatcctcatacaaaatcgagaacaaactttcttttttcatgtattgatagattgaaaatatgattcttt |
48712468 |
T |
|
| Q |
251 |
tgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatattctcacttca |
318 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| | | || ||||||| ||||||||||||||||||| |
|
|
| T |
48712469 |
tgtgcaagcaaaatccataaagcttaacaatatttatctg-tttatttttgataatattctcacttca |
48712535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 151 - 318
Target Start/End: Complemental strand, 54123093 - 54122926
Alignment:
| Q |
151 |
ctttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttt |
250 |
Q |
| |
|
||||| || |||||||||| |||| |||||| ||| | |||| || |||||||| ||| || | | ||||||||||||||| |||||||||| ||||| |
|
|
| T |
54123093 |
cttttcctgcaattgaattccacatcttctaaatccgcatacaaaactgagaacaaactttcttttttcatgtattgatagattaaaaacatgattcttt |
54122994 |
T |
|
| Q |
251 |
tgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatattctcacttca |
318 |
Q |
| |
|
|||||||||| ||| ||||||||| | |||| | | |||||||||| | ||||||||||||||||| |
|
|
| T |
54122993 |
tgtgcaagcaaaatatataaagcttaaagatatttatctgctttattttttataatattctcacttca |
54122926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 151 - 318
Target Start/End: Complemental strand, 31658192 - 31658025
Alignment:
| Q |
151 |
ctttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttt |
250 |
Q |
| |
|
|||||||| ||||| |||| |||||||||| ||| || | || || |||||||| ||| || | | ||||||||||||||| |||||||||| ||||| |
|
|
| T |
31658192 |
ctttttctgcaattaaattctacagcttctaaatcctcatataaaaccgagaacaaactttcttttttcatgtattgatagattaaaaacatgattcttt |
31658093 |
T |
|
| Q |
251 |
tgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatattctcacttca |
318 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| | | |||||||||| ||||||||||||||||||| |
|
|
| T |
31658092 |
tgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca |
31658025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 153 - 318
Target Start/End: Complemental strand, 1257984 - 1257819
Alignment:
| Q |
153 |
ttttctccaattgaatttcacagcttctacatcatcgaacaagacagagaacaagcttcctctctccatgtattgatagatcaaaaacatgactcttttg |
252 |
Q |
| |
|
|||||| |||||||||| | ||||||||| ||| || |||| || |||||||| ||| || | | ||||||||||||||| |||||||||| ||||||| |
|
|
| T |
1257984 |
ttttctgcaattgaattcctcagcttctaaatcctcatacaaaaccgagaacaaactttcttttttcatgtattgatagattaaaaacatgattcttttg |
1257885 |
T |
|
| Q |
253 |
tgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatattctcacttca |
318 |
Q |
| |
|
||||| || ||| ||||||| || ||||||| | | |||||||||| ||||||||||||||||||| |
|
|
| T |
1257884 |
tgcaaacaaaattcataaagtttaacaatatttatctgctttatttttgataatattctcacttca |
1257819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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