View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19356_low_8 (Length: 219)
Name: NF19356_low_8
Description: NF19356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19356_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 60617 - 60808
Alignment:
| Q |
13 |
tgagatgaaacgcctattttgccacaaatcaactacccacaacctctttaccattgacatgtgtcattgttcgacaccgacacatgtgatgtgattactt |
112 |
Q |
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| T |
60617 |
tgagatgaaacgcctattttgccacaaatcaactacccacaacctctttaccatcgacatgtgtcgttgttcgacaccgacacatgtgatgtgattactt |
60716 |
T |
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| Q |
113 |
tcaattttgtcattttttaaaattattaacggtgtcgatgtgtacatgtcaatatgtgcatgtcaatgtcgaatcaggtgtatgtgcttcat |
204 |
Q |
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| T |
60717 |
tcaattttgtcattttttaaaattattaacgatgtcgacgtgtacatgtcaatatgtgcatgtcaatgtcgaatcaggtgtatgtgcttcat |
60808 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 14480185 - 14480138
Alignment:
| Q |
101 |
atgtgattactttcaattttgtcattttttaaaattattaacggtgtc |
148 |
Q |
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| T |
14480185 |
atgtgattactttcaattttgtcatttttccaaattattatcggtgtc |
14480138 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 18525420 - 18525353
Alignment:
| Q |
86 |
acaccgacacatgtgatgtgattactttcaattttgtcattttttaaaattattaacggtgtcgatgt |
153 |
Q |
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| T |
18525420 |
acacggacacatgtgatgtgattactttcagtcatgtcattttgttaaattactacgggtgtcgatgt |
18525353 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 18750923 - 18750869
Alignment:
| Q |
101 |
atgtgattactttcaattttgtcattttttaaaattattaacggtgtcgatgtgt |
155 |
Q |
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| T |
18750923 |
atgtgattacattcaattatgtcattttcttaaattattaccgttgtcgatgtgt |
18750869 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 861907 - 861944
Alignment:
| Q |
103 |
gtgattactttcaattttgtcattttttaaaattatta |
140 |
Q |
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| T |
861907 |
gtgactactttcaattttgtcattttttcaaattatta |
861944 |
T |
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