View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19357_high_2 (Length: 318)
Name: NF19357_high_2
Description: NF19357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19357_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 40 - 300
Target Start/End: Complemental strand, 52366677 - 52366413
Alignment:
| Q |
40 |
tttatgaacaatctctctaacattcacttttttattgagtaaaactcatgtaggtctcaccactttttatgaaattcattcttaatgtgtgagaaagtaa |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
52366677 |
tttatgaacaatctctctaacattcacttttttattgagtaaaactcatgtaggtctcaccactttatatgaaattcattcttaatgtgtgagaaagtaa |
52366578 |
T |
|
| Q |
140 |
tgacaacttaacaatttagaagtcagtatagtaatatacaaactcata-ttttggc---aatagtattgagaagaaaaaataaaccaattatttactttt |
235 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52366577 |
tgaaaacttaacaatttagaagtcagtataataatatacaaactcatatttttggcaataatagtattgagaagaaaaaataaaccaattatttaatttt |
52366478 |
T |
|
| Q |
236 |
atttgtttttgcttcataaaagctcatatatatcaaaagctgtttgcattaaagatagctatctt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52366477 |
atttgtttttgcttcataaaagctcatatatatcaaaagctgtttgcattaaagatagctatctt |
52366413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 45 - 105
Target Start/End: Original strand, 29310443 - 29310503
Alignment:
| Q |
45 |
gaacaatctctctaacattcacttttttattgagtaaaactcatgtaggtctcaccacttt |
105 |
Q |
| |
|
||||| ||| ||||||| |||||||||||||| || |||||||||| |||||||||||||| |
|
|
| T |
29310443 |
gaacactctttctaacactcacttttttattgggtgaaactcatgtgggtctcaccacttt |
29310503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 41873463 - 41873517
Alignment:
| Q |
51 |
tctctctaacattcacttttttattgagtaaaactcatgtaggtctcaccacttt |
105 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||||| |||||| |||||| |
|
|
| T |
41873463 |
tctctctaacactcacttttttattgggtgaaactcatgtgagtctcatcacttt |
41873517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 32377291 - 32377339
Alignment:
| Q |
57 |
taacattcacttttttattgagtaaaactcatgtaggtctcaccacttt |
105 |
Q |
| |
|
|||||||||||||||||||| ||||| | |||||||||| |||||||| |
|
|
| T |
32377291 |
taacattcacttttttattggataaaatttatgtaggtcttaccacttt |
32377339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10421572 - 10421611
Alignment:
| Q |
1 |
tcaaaattagttttcccatggtggaaaacaacttcacttt |
40 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
10421572 |
tcaaaattagctttcccatggtggaaaacaacttcccttt |
10421611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 37306433 - 37306487
Alignment:
| Q |
51 |
tctctctaacattcacttttttattgagtaaaactcatgtaggtctcaccacttt |
105 |
Q |
| |
|
||||||||||| ||||| || ||||| || |||||||||| |||||||||||||| |
|
|
| T |
37306433 |
tctctctaacactcactcttatattgggtgaaactcatgtgggtctcaccacttt |
37306487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 34142295 - 34142236
Alignment:
| Q |
46 |
aacaatctctctaacattcacttttttattgagtaaaactcatgtaggtctcaccacttt |
105 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | ||| ||||||| ||||||| ||||| |
|
|
| T |
34142295 |
aacaatctctcaaacattcacttttttattggatgaaattcatgtatgtctcactacttt |
34142236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 27183781 - 27183833
Alignment:
| Q |
53 |
tctctaacattcacttttttattgagtaaaactcatgtaggtctcaccacttt |
105 |
Q |
| |
|
||||||||| ||||| || | |||| | ||||||||||||||||||||||||| |
|
|
| T |
27183781 |
tctctaacactcactcttattttgattgaaactcatgtaggtctcaccacttt |
27183833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 27833323 - 27833375
Alignment:
| Q |
53 |
tctctaacattcacttttttattgagtaaaactcatgtaggtctcaccacttt |
105 |
Q |
| |
|
||||||||| ||||| || | |||| | ||||||||||||||||||||||||| |
|
|
| T |
27833323 |
tctctaacactcactcttattttgattgaaactcatgtaggtctcaccacttt |
27833375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 10067283 - 10067321
Alignment:
| Q |
51 |
tctctctaacattcacttttttattgagtaaaactcatg |
89 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
10067283 |
tctctctaacaatcacttttttattgaataaaactcatg |
10067321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 4595766 - 4595830
Alignment:
| Q |
46 |
aacaatctctctaacattcacttttttattgagtaaaactcatgtaggtctcaccactttttatg |
110 |
Q |
| |
|
|||| |||||||| || ||||| ||||||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
4595766 |
aacactctctctagcactcactcttttattgagtgaaatcaatgtatgtctcaccactttttatg |
4595830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 43275804 - 43275852
Alignment:
| Q |
51 |
tctctctaacattcacttttttattgagtaaaactcatgtaggtctcac |
99 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||| |||||| |||||||| |
|
|
| T |
43275804 |
tctctccaacactcacttttttattgagtgaaattcatgtgggtctcac |
43275852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University