View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19357_low_5 (Length: 294)
Name: NF19357_low_5
Description: NF19357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19357_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 33801663 - 33801938
Alignment:
| Q |
1 |
atttgtaaagtacatgcaagaaatgtgatgacttcaaaatggtacatatctagatgatttaatttaatgggaatgtttattctgctgcagctgctagt-a |
99 |
Q |
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|||||||||||||||| ||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
33801663 |
atttgtaaagtacatgaaagtaatgtgatgaattcaaaatggtacatatcaagatgatttaatttaatgggaatgtttattctgctgcaactgctagtta |
33801762 |
T |
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| Q |
100 |
atccaacggtatagtaaaacaatcacaaagtagtattcaatcttttacctaaataactaatctaaaaatttgggttaaacataactcaaatatcttatgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33801763 |
atccaacggtatagtaaaacaatcacaaagtagtattcaatcttttacctaaataactaatctaaaaatttgggttaaacataactcaaatatcttatgt |
33801862 |
T |
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| Q |
200 |
atctaatgtagaattttagcacacctcctcacaccaataattatacatctggatgtgacatggtggtacaatagtg |
275 |
Q |
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| T |
33801863 |
atttaatgtagaattttagcacacctcctcacaccaatgattatacatctggatgtgacatggtggtacaatagtg |
33801938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 33730385 - 33730660
Alignment:
| Q |
1 |
atttgtaaagtacatgcaagaaatgtgatgacttcaaaatggtacatatctagatgatttaatttaatgggaatgtttattctgctgcagctgctagt-a |
99 |
Q |
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|||||||||||||||| ||| |||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
33730385 |
atttgtaaagtacatgaaagtaatgtgatgaattcaaaatggtacatatcaagatgatttaatttattgggaatgtttattctgctgcagctgctagtta |
33730484 |
T |
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| Q |
100 |
atccaacggtatagtaaaacaatcacaaagtagtattcaatcttttacctaaataactaatctaaaaatttgggttaaacataactcaaatatcttatgt |
199 |
Q |
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| T |
33730485 |
atccaacgttatagtaaaacaatcacaaagtagtattcaatcttttacctaaataattaatctaaaaatttgggttaaacataactcaaatatcttatgt |
33730584 |
T |
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| Q |
200 |
atctaatgtagaattttagcacacctcctcacaccaataattatacatctggatgtgacatggtggtacaatagtg |
275 |
Q |
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|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33730585 |
atttaatgtagaattttagcacacctcctcacaccaatgattatacatctggatgtgacatggtggtacaatagtg |
33730660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 191
Target Start/End: Complemental strand, 6146904 - 6146752
Alignment:
| Q |
36 |
aaaatggtacatatctagatgatttaatttaatgggaatgtttattctgctgcagctgctagtaatccaacggtatagtaaaacaatcacaaagtagtat |
135 |
Q |
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| T |
6146904 |
aaaatggtgcatatcaagatgatttaatttcatggggatgtttattctgcagcaact---agtaatcttgcggtatagtaaaaccatcataaaatagtat |
6146808 |
T |
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| Q |
136 |
tcaatcttttacctaaataactaatctaaaaatttgggttaaacataactcaaata |
191 |
Q |
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| T |
6146807 |
ccaatctataatctaaataactaatatcagaatttgggttgaacataacttaaata |
6146752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 108 - 241
Target Start/End: Complemental strand, 6127513 - 6127375
Alignment:
| Q |
108 |
gtatagtaaaacaatcacaaagtagtattcaatcttttacctaaataactaatctaaaaatttgggttaaacataact------caaatatcttatgtat |
201 |
Q |
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|||||||||||| |||| ||| |||||| |||||| | ||||||||||||||||| | ||||| |||| ||||||||| ||||| | ||||||| |
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| T |
6127513 |
gtatagtaaaaccatcataaaatagtatccaatctataacctaaataactaatctcagaatttaggttgaacataacttgtagacaaat-taatatgtat |
6127415 |
T |
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| Q |
202 |
ctaatgtagaattttagcacacctcctcacaccaataatt |
241 |
Q |
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| T |
6127414 |
ttaatgtataatttcagcacacctcctcacaccaataatt |
6127375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 280
Target Start/End: Complemental strand, 6146728 - 6146642
Alignment:
| Q |
195 |
tatgtatctaatgtagaattttagcacacctcctcacaccaataattatacatctggatgtgacatg-gtggtacaatagtgatgat |
280 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||| ||| | |||| | |||||||| |||||||||||||| |||| |
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| T |
6146728 |
tatgtatttaatgtataattttagcacacctcctcacaccaatatttagatatctaaacgtgacatgtgtggtacaatagtggtgat |
6146642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 6152977 - 6152912
Alignment:
| Q |
126 |
aaagtagtattcaatcttttacctaaataactaatctaaaaatttgggttaaacataactcaaata |
191 |
Q |
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| T |
6152977 |
aaagtagtatccaatctataacctaaacaactaatctcagaatttgggttgaacataactcaaata |
6152912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 6127627 - 6127576
Alignment:
| Q |
34 |
tcaaaatggtacatatctagatgatttaatttaatgggaatgtttattctgc |
85 |
Q |
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|||||||||| |||||| | |||||||||||| ||||| ||||||||||||| |
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| T |
6127627 |
tcaaaatggtgcatatcaaaatgatttaatttcatggggatgtttattctgc |
6127576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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