View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_1 (Length: 821)
Name: NF19358_high_1
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 259 - 805
Target Start/End: Original strand, 6452301 - 6452864
Alignment:
| Q |
259 |
gatcacattgaatcttcactagaatctttatatttttgcatgtaaattaactacctccgcgtgcaactttaaaacactaattcttgaagtctttgccaaa |
358 |
Q |
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| T |
6452301 |
gatcacattgaatcttcactcgaatctttatatttttgcatgtaaattgactacctccgcatgcaactttaaaacactaattcttcaagtctttgccaaa |
6452400 |
T |
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| Q |
359 |
cctaaatggaggcaacaattttctaaaagcttgaaccttgatgaatttccatactcatatttgaatccgagaccttgtcaaatctttgatattttatttt |
458 |
Q |
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| T |
6452401 |
cctaaatggaggaaacaattttctaaaagcttgaaccttgatgaatttccaaactcatatttgaatccgagaccttgtcaaatctttgattttttatttt |
6452500 |
T |
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| Q |
459 |
atgttttatgaacaagtcaaatctttgtacttaggatacatatatatattaacttaaataatgtaaataagcagatagacataattgaagtggttggttg |
558 |
Q |
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| T |
6452501 |
atgttttatgaacaagtcaaatctttgtacttaggatac--atatatattaacttaaataatgtaaataagaagatagacataattgaagtggttggttg |
6452598 |
T |
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| Q |
559 |
caaaacatataaaagaatgatagtcatggtcaaagtaaata-------------------atgcattaaacattggtattggtatcccatatagctatag |
639 |
Q |
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| T |
6452599 |
caaaacatataaaagaatgatagtcatggtcaaagtaaataatgcaactatagctatggtatgcattaaacattggtattggtatcccatatagctatag |
6452698 |
T |
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| Q |
640 |
ttaacaggagttaaccaatgaggtatgatgccacatatgcatnnnnnnnccaaatgtgaggtatagactatagaagaggaggatattttggcctgccagt |
739 |
Q |
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| T |
6452699 |
ttaacaggagttaaccaatgaggtatgatgccacatatgcatgggggggccaaatgtgaggtatagactatagaagaggaggatattttggcctgccagt |
6452798 |
T |
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| Q |
740 |
caatcctcgttcataataaaaacgggaatattccaattggagaaatatgtattaaaggagaaaaat |
805 |
Q |
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| T |
6452799 |
caatcctcgttcataataaaaacgggaatattccaattggagaaatatgtattaaaggagaaaaat |
6452864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 6452050 - 6452233
Alignment:
| Q |
11 |
aagaatatatgacacatacatgcattaccaaatcattattttgatagagtttgagaagaaatatttaaggcttt-gttccatcaaagaccaaattgttca |
109 |
Q |
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| T |
6452050 |
aagaatatatgacacatacatgcattaccaaatcattattgtgatagagtttgagaagaaatatttaaggcttttgttccatcaaagaccaaattgttca |
6452149 |
T |
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| Q |
110 |
ttttgaaatgatattacacctttgtcaaacactaaaaaaccgatttttgactgaaaacttatacttatgaattaagttgatctg |
193 |
Q |
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| T |
6452150 |
ttttgaaatgatattacacctttgtcaaacactaaaaaaccgatttttgaccgaaaacttatacttatgaactaagttgatctg |
6452233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 6451790 - 6451881
Alignment:
| Q |
14 |
aatatatgacacatacatgcattaccaaatcattattttgatagagtttgagaagaaatatttaagg-ctttgttccatcaaagaccaaatt |
104 |
Q |
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| T |
6451790 |
aatatatgacacatatatgtattaccaaatcattgttttgatagagtataagaagaaatatttaaggatttttttccatcaaggaccaaatt |
6451881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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