View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19358_high_10 (Length: 555)

Name: NF19358_high_10
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19358_high_10
NF19358_high_10
[»] chr1 (4 HSPs)
chr1 (19-555)||(9949002-9949530)
chr1 (16-206)||(31730886-31731073)
chr1 (22-109)||(41945646-41945736)
chr1 (157-204)||(41945758-41945805)
[»] chr5 (5 HSPs)
chr5 (57-150)||(28641062-28641155)
chr5 (16-79)||(28640998-28641061)
chr5 (159-207)||(3293737-3293785)
chr5 (159-202)||(10711679-10711722)
chr5 (156-198)||(28641688-28641730)
[»] chr2 (2 HSPs)
chr2 (26-149)||(7593280-7593406)
chr2 (210-386)||(15143098-15143274)
[»] chr6 (3 HSPs)
chr6 (208-344)||(9282437-9282573)
chr6 (207-386)||(10441922-10442101)
chr6 (245-383)||(26351587-26351722)
[»] scaffold1458 (1 HSPs)
scaffold1458 (207-352)||(8-152)
[»] scaffold0515 (1 HSPs)
scaffold0515 (207-352)||(1955-2099)
[»] scaffold0317 (1 HSPs)
scaffold0317 (207-352)||(17609-17753)
[»] scaffold0306 (1 HSPs)
scaffold0306 (207-352)||(1955-2099)
[»] chr4 (3 HSPs)
chr4 (249-398)||(24838307-24838458)
chr4 (159-202)||(53232830-53232873)
chr4 (159-199)||(564296-564336)
[»] scaffold0197 (1 HSPs)
scaffold0197 (159-207)||(26289-26337)
[»] scaffold0006 (1 HSPs)
scaffold0006 (158-206)||(71684-71732)
[»] chr7 (4 HSPs)
chr7 (159-206)||(21312016-21312063)
chr7 (159-206)||(23572428-23572475)
chr7 (158-206)||(37914469-37914516)
chr7 (159-199)||(41082261-41082301)
[»] chr8 (2 HSPs)
chr8 (159-202)||(26647254-26647297)
chr8 (317-386)||(18186911-18186980)
[»] scaffold0041 (1 HSPs)
scaffold0041 (159-199)||(99393-99433)


Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 555
Target Start/End: Original strand, 9949002 - 9949530
Alignment:
Q  19 aaagtgtataatatactggaattatcaattactatgagccactatatatgtaatagaagtaatgaacttaattgtgtatggggatcttataattttatca 118  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||   |||||||||||||||| ||||||||||||||| ||||||||| |||||||    
T  9949002 aaagtgtacaatatactgaaattatcaattactatgagccactatat---taatagaagtaatgaatttaattgtgtatggg-atcttataaatttatca 9949097  T
Q  119 aagttatctcacataatatagttgggaaaaaagaaataaatttgtgcaggcaggagcccccacaaccttatgtgtggctccgccactggctcatcacatg 218  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  9949098 aagttatctcacataatatagttgggaaaaaagaaaaaaaattgtgcaggcaggagcccacacaaccttgtgtgtggctccgccactggctcatcacatg 9949197  T
Q  219 ttcttttcttgcctcggattcgcccttctgtggtgtatggttagatcttggattaaaatatcttcagctgatccaaatgtgctacaaaagcatcttactc 318  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||    
T  9949198 ttcttttcttgccccggtttcgcccttctgtggtgtatggttagatcttggattaaaatatcttcaactgattcagatgtgctataaaagcatcttactc 9949297  T
Q  319 agtttattcattcttctggaggattgtgagctcgccattctttcttacaacatatttgcttatgttgtttgggttatgtgacggtcgagtccttttgttt 418  Q
    |||||||||||| ||||||||||||  ||||||||| |||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||     
T  9949298 agtttattcatttttctggaggattacgagctcgccgttctttcttacatcatatttgcttatgttgtttgggttatgtggtggtcgagtccttttgtt- 9949396  T
Q  419 gtacgtgcatcaactaaacccttttgtttcttatgtttttggttatgtgttgagcgtaaatttttgagannnnnnnnatgacacaccttgtactattaag 518  Q
       ||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||| |||        |||||||||||||||||||||||    
T  9949397 ---cgtacatcaactaagcccttttgtttcttatatttttggttatgtgttgagcgtaaacttttaagattttttttatgacacaccttgtactattaag 9949493  T
Q  519 aactttcagttgatgttaatataatctatttttgttt 555  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  9949494 aactttcggttggtgttaatataatctatttttgttt 9949530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 31731073 - 31730886
Alignment:
Q  16 atcaaagtgtataatatactggaattatcaattactatgagccactatatatgtaatagaagtaatgaacttaattgtgtatggggatcttataatttta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  31731073 atcaaagtgtataatatactggaattatcaattactatgagccactatatatgtaatagaattaatgagcttaattgtgtatggggatcttataatttta 31730974  T
Q  116 tcaaagttatctcacataatatagttgggaaaaaagaaataaatttgtgcaggcaggagcccccacaaccttatgtgtggctccgccactg 206  Q
    |||||||||||||||||||||||||||||||||   ||| ||| |||||||||||||||| | ||||||||| ||||||||||||||||||    
T  31730973 tcaaagttatctcacataatatagttgggaaaa---aaaaaaaattgtgcaggcaggagctcacacaaccttgtgtgtggctccgccactg 31730886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 41945646 - 41945736
Alignment:
Q  22 gtgtataatatactggaattatcaattactatgagccactatatatg---taatagaagtaatgaacttaattgtgtatggggatcttata 109  Q
    ||||||||| |||| |||||||||||||||||||||| |||  ||||   ||||||||||||||| || |||||||| |||||||||||||    
T  41945646 gtgtataatctactagaattatcaattactatgagcccctaagtatgtaataatagaagtaatgagctcaattgtgtgtggggatcttata 41945736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 41945758 - 41945805
Alignment:
Q  157 aatttgtgcaggcaggagcccccacaaccttatgtgtggctccgccac 204  Q
    ||||||||||  ||||||||| ||||||||| ||||||||||||||||    
T  41945758 aatttgtgcacacaggagcccacacaaccttgtgtgtggctccgccac 41945805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 28641062 - 28641155
Alignment:
Q  57 ccactatatatgtaatagaagtaatgaacttaattgtgtatggggatcttataattttatcaaagttatctcacataatatagttgggaaaaaa 150  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  28641062 ccactatatatgtaatagaattaatgagcttaattgtgtatggggatcttataattttatcaaagttatataacataatatagttgggaaaaaa 28641155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 28640998 - 28641061
Alignment:
Q  16 atcaaagtgtataatatactggaattatcaattactatgagccactatatatgtaatagaagta 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28640998 atcaaagtgtataatatactggaattatcaattactatgagccactatatatgtaatagaagta 28641061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 3293785 - 3293737
Alignment:
Q  159 tttgtgcaggcaggagcccccacaaccttatgtgtggctccgccactgg 207  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  3293785 tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcccctgg 3293737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 10711679 - 10711722
Alignment:
Q  159 tttgtgcaggcaggagcccccacaaccttatgtgtggctccgcc 202  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  10711679 tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcc 10711722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 28641688 - 28641730
Alignment:
Q  156 aaatttgtgcaggcaggagcccccacaaccttatgtgtggctc 198  Q
    |||||||||||||||||||||| ||||||||| ||||||||||    
T  28641688 aaatttgtgcaggcaggagcccacacaaccttgtgtgtggctc 28641730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 26 - 149
Target Start/End: Original strand, 7593280 - 7593406
Alignment:
Q  26 ataatatactggaattatcaattactatgagccactatatatgtaatagaagtaatgaacttaattgtgtatggggatcttataattttatcaaagttat 125  Q
    ||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||||||| | |||||||||||| | |||    
T  7593280 ataatctactagaattatcaattactatgagccattatatatgtaatagaagtaatgaactcaattatgtttggggatcatgtaattttatcaaggctat 7593379  T
Q  126 ctcac---ataatatagttgggaaaaa 149  Q
    |||||   ||||||||||||| |||||    
T  7593380 ctcacgtaataatatagttggtaaaaa 7593406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 386
Target Start/End: Complemental strand, 15143274 - 15143098
Alignment:
Q  210 catcacatgttcttttcttgcctcggattcgcccttctgtggtgtatggttagatcttggattaaaatatcttcagctgatccaaatgtgctacaaaagc 309  Q
    |||||| ||||| ||||||||| ||  ||||||| | ||||| | |||| |||||||||||||   ||||  | |||||||||| ||    ||||  | |    
T  15143274 catcacttgttcctttcttgccccgctttcgcccctttgtggagcatggatagatcttggattggtatattattagctgatccagattccttacaggatc 15143175  T
Q  310 atcttactcagtttattcattcttctggaggattgtgagctcgccattctttcttacaacatatttgcttatgttgt 386  Q
    |||||  |||||||||||||||||||||||| ||| ||| ||| | ||| |||||||| | |||||| |||||||||    
T  15143174 atcttgttcagtttattcattcttctggaggtttgcgagttcgtcgttcattcttacagcttatttggttatgttgt 15143098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 208 - 344
Target Start/End: Complemental strand, 9282573 - 9282437
Alignment:
Q  208 ctcatcacatgttcttttcttgcctcggattcgcccttctgtggtgtatggttagatcttggattaaaatatcttcagctgatccaaatgtgctacaaaa 307  Q
    |||||||| ||||| |||||| || ||  ||||||| ||||||| ||||||||||||||||||||  |||||||||| |  ||||  |||||||||||||    
T  9282573 ctcatcacttgttcctttcttcccccgttttcgcccctctgtggcgtatggttagatcttggattggaatatcttcaccgtatccggatgtgctacaaaa 9282474  T
Q  308 gcatcttactcagtttattcattcttctggaggattg 344  Q
     ||||||  ||||||||||||||||||||||||||||    
T  9282473 tcatcttgttcagtttattcattcttctggaggattg 9282437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 386
Target Start/End: Complemental strand, 10442101 - 10441922
Alignment:
Q  207 gctcatcacatgttcttttcttgcctcggattcgcccttctgtggtgtatggttagatcttggattaaaatatcttcagctgatccaaatgtgctacaaa 306  Q
    ||||||||| ||||| ||| ||||| ||  ||||||  ||| |||||||||||||||| |||||||  |||||||||||||| ||| ||||||||| | |    
T  10442101 gctcatcacttgttccttttttgccccgttttcgcctctctatggtgtatggttagatgttggattggaatatcttcagctggtccgaatgtgctataga 10442002  T
Q  307 agcatcttactcagtttattcattcttctggaggattgtgagctcgccattctttcttacaacatatttgcttatgttgt 386  Q
      ||||||  | |||||||||||||||||||| ||||| ||||||| | ||||||||| ||   |||||| |||||||||    
T  10442001 ttcatcttgtttagtttattcattcttctggatgattgcgagctcgtcgttctttcttgcaggttatttggttatgttgt 10441922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 383
Target Start/End: Original strand, 26351587 - 26351722
Alignment:
Q  245 tctgtggtgtatggttagatcttggattaaaatatcttcagctgatccaaatgtgctacaaaagcatcttactcagtttattcattcttctggaggattg 344  Q
    |||||| ||||||||||||||||| ||| | |||||||||||||||||  ||    || | |  ||||||  ||||||||||||||||| || |||||||    
T  26351587 tctgtgctgtatggttagatcttgcattgatatatcttcagctgatccggat---ttatagattcatcttgttcagtttattcattcttatgaaggattg 26351683  T
Q  345 tgagctcgccattctttcttacaacatatttgcttatgt 383  Q
     |||||||| |||| || || |||| |||||| ||||||    
T  26351684 cgagctcgcaattcatttttgcaacttatttggttatgt 26351722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1458 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold1458
Description:

Target: scaffold1458; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 207 - 352
Target Start/End: Complemental strand, 152 - 8
Alignment:
Q  207 gctcatcacatgttcttttcttgcctcggattcgcccttctgtggtgtatggttagatcttggattaaaatatcttcagctgatccaaatgtgctacaaa 306  Q
    ||||||||| ||||| ||||||||| ||  ||   |||| |||| |||||||||||||||||||||  |||||||||||| |||||  |||||| | | |    
T  152 gctcatcacttgttcctttcttgccccgtttttatccttatgtgttgtatggttagatcttggattggaatatcttcagccgatcctgatgtgccataga 53  T
Q  307 agcatcttactcagtttattcattcttctggaggattgtgagctcg 352  Q
    | ||| ||  ||||||||||||||||| |||||||||| |||||||    
T  52 atcat-ttgttcagtttattcattcttttggaggattgcgagctcg 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 207 - 352
Target Start/End: Complemental strand, 2099 - 1955
Alignment:
Q  207 gctcatcacatgttcttttcttgcctcggattcgcccttctgtggtgtatggttagatcttggattaaaatatcttcagctgatccaaatgtgctacaaa 306  Q
    ||||||||| ||||| ||||||||| ||  ||   |||| |||| |||||||||||||||||||||  |||||||||||| |||||  |||||| | | |    
T  2099 gctcatcacttgttcctttcttgccccgtttttatccttatgtgttgtatggttagatcttggattggaatatcttcagccgatcctgatgtgccataga 2000  T
Q  307 agcatcttactcagtttattcattcttctggaggattgtgagctcg 352  Q
    | ||| ||  ||||||||||||||||| |||||||||| |||||||    
T  1999 atcat-ttgttcagtttattcattcttttggaggattgcgagctcg 1955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 207 - 352
Target Start/End: Original strand, 17609 - 17753
Alignment:
Q  207 gctcatcacatgttcttttcttgcctcggattcgcccttctgtggtgtatggttagatcttggattaaaatatcttcagctgatccaaatgtgctacaaa 306  Q
    ||||||||| ||||| ||||||||| ||  ||   |||| |||| |||||||||||||||||||||  |||||||||||| |||||  |||||| | | |    
T  17609 gctcatcacttgttcctttcttgccccgtttttatccttatgtgttgtatggttagatcttggattggaatatcttcagccgatcctgatgtgccataga 17708  T
Q  307 agcatcttactcagtttattcattcttctggaggattgtgagctcg 352  Q
    | ||| ||  ||||||||||||||||| |||||||||| |||||||    
T  17709 atcat-ttgttcagtttattcattcttttggaggattgcgagctcg 17753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 207 - 352
Target Start/End: Complemental strand, 2099 - 1955
Alignment:
Q  207 gctcatcacatgttcttttcttgcctcggattcgcccttctgtggtgtatggttagatcttggattaaaatatcttcagctgatccaaatgtgctacaaa 306  Q
    ||||||||| ||||| ||||||||| ||  ||   |||| |||| |||||||||||||||||||||  |||||||||||| |||||  |||||| | | |    
T  2099 gctcatcacttgttcctttcttgccccgtttttatccttatgtgttgtatggttagatcttggattggaatatcttcagccgatcctgatgtgccataga 2000  T
Q  307 agcatcttactcagtttattcattcttctggaggattgtgagctcg 352  Q
    | ||| ||  ||||||||||||||||| |||||||||| |||||||    
T  1999 atcat-ttgttcagtttattcattcttttggaggattgcgagctcg 1955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 398
Target Start/End: Original strand, 24838307 - 24838458
Alignment:
Q  249 tggtgtatggttagatcttggattaaaatatcttcagctgatccaaatgtgctacaaaagcatcttactcagtttattcattcttctggaggattgtgag 348  Q
    ||||| |||||||| || ||||||   ||||||||||||||||   || || ||||  | ||||||  ||||||||||||||||||||||||||||||||    
T  24838307 tggtgcatggttaggtcgtggattggtatatcttcagctgatctggatttgttacaggatcatcttgttcagtttattcattcttctggaggattgtgag 24838406  T
Q  349 ctcgccattctttcttacaacatatttgcttatgt--tgtttgggttatgtg 398  Q
     ||| | ||| ||||| || | |||||| ||||||  |||||||||||||||    
T  24838407 ttcgtcgttcattcttgcagcttatttggttatgttgtgtttgggttatgtg 24838458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 202
Target Start/End: Original strand, 53232830 - 53232873
Alignment:
Q  159 tttgtgcaggcaggagcccccacaaccttatgtgtggctccgcc 202  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||||    
T  53232830 tttgtgcaggcaggagcccacacaagcttgtgtgtggctccgcc 53232873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 564296 - 564336
Alignment:
Q  159 tttgtgcaggcaggagcccccacaaccttatgtgtggctcc 199  Q
    |||||||||||| |||||| ||||||||| |||||||||||    
T  564296 tttgtgcaggcacgagcccacacaaccttgtgtgtggctcc 564336  T

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Target: scaffold0197 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 26289 - 26337
Alignment:
Q  159 tttgtgcaggcaggagcccccacaaccttatgtgtggctccgccactgg 207  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  26289 tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgccactgg 26337  T

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Target: scaffold0006 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 71684 - 71732
Alignment:
Q  158 atttgtgcaggcaggagcccccacaaccttatgtgtggctccgccactg 206  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  71684 atttgtgcaggcaggagcccacacaaccttgtgtgtggctccgccactg 71732  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 21312016 - 21312063
Alignment:
Q  159 tttgtgcaggcaggagcccccacaaccttatgtgtggctccgccactg 206  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  21312016 tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgccactg 21312063  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 23572428 - 23572475
Alignment:
Q  159 tttgtgcaggcaggagcccccacaaccttatgtgtggctccgccactg 206  Q
    |||||| |||||||||||| ||||||||| ||||||||||||||||||    
T  23572428 tttgtgtaggcaggagcccacacaaccttgtgtgtggctccgccactg 23572475  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 37914516 - 37914469
Alignment:
Q  158 atttgtgcaggcaggagcccccacaaccttatgtgtggctccgccactg 206  Q
    ||||||||||||| |||||| ||||||| | ||||||||||||||||||    
T  37914516 atttgtgcaggcatgagcccacacaacc-tgtgtgtggctccgccactg 37914469  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 41082261 - 41082301
Alignment:
Q  159 tttgtgcaggcaggagcccccacaaccttatgtgtggctcc 199  Q
    ||||||||||||||||||| | ||||||| |||||||||||    
T  41082261 tttgtgcaggcaggagcccactcaaccttgtgtgtggctcc 41082301  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 26647297 - 26647254
Alignment:
Q  159 tttgtgcaggcaggagcccccacaaccttatgtgtggctccgcc 202  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  26647297 tttgtgcaggcaggagcccacacaaccttgtgtgtggctccgcc 26647254  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 18186980 - 18186911
Alignment:
Q  317 tcagtttattcattcttctggaggattgtgagctcgccattctttcttacaacatatttgcttatgttgt 386  Q
    ||||||||||||||||||| |||||| | ||||||| | ||| ||||| || | |||||| |||||||||    
T  18186980 tcagtttattcattcttctagaggatcgcgagctcgtcgttcattcttgcagcttatttggttatgttgt 18186911  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 99393 - 99433
Alignment:
Q  159 tttgtgcaggcaggagcccccacaaccttatgtgtggctcc 199  Q
    ||||||||||||||||||| | ||||||| |||||||||||    
T  99393 tttgtgcaggcaggagcccactcaaccttgtgtgtggctcc 99433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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