View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19358_high_112 (Length: 269)
Name: NF19358_high_112
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_112 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 18747899 - 18748140
Alignment:
| Q |
11 |
cacagatgtaaaggtaaatatttggtcctcaaaataattactagtaaatgtacctatgcaaagtactaatgaaattaagattactaatgattgttttgca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18747899 |
cacagatgtaaaggtaaatatttggtccttaaaataattactagtaaatgtacctatgcaaagtactaatgaaattaagattactaatgattgttttgca |
18747998 |
T |
|
| Q |
111 |
nnnnnnnnncttccagagatgtgccatagatgatgatacttattcaattgttgaaaatacac--acacactaaaagggggcttgctttactaatttagaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18747999 |
tttttttt-cttccagagatgtgccatagatgatgatacttattcaattgttgaaaatacacacacacactaaaagggggcttgctttactaatttagaa |
18748097 |
T |
|
| Q |
209 |
tattacttgttgcaaaagggagcttgctttactttggaaaagc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18748098 |
tattacttgttgcaaaagggagcttgctttactttggaaaagc |
18748140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 52367687 - 52367530
Alignment:
| Q |
11 |
cacagatgtaaaggtaaatatttggtcctcaaaataattactag---taaatgt-acctatgcaaagtactaatgaaattaagattactaatgattgttt |
106 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||| ||||||| ||| ||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
52367687 |
cacaaatgtaaaggtaaatatttgatcctcaaaataattactagcagtaaatgttacccatgtgaagtactaatgaaattaagattactgatgattgttt |
52367588 |
T |
|
| Q |
107 |
tgcannnnnnnnncttccagagatgtgccatagatgatgatacttattcaattgttgaaaat |
168 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52367587 |
tgcatttgtt----ttccagagatgtgccatagatgatgatacttattcaattgttggaaat |
52367530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 23247903 - 23247664
Alignment:
| Q |
11 |
cacagatgtaaaggtaaatatttggtcctcaaaataattactagtaaatgtacctatgcaaagtactaatgaaattaagattactaatgattgttttgca |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23247903 |
cacaaatgtaaaggtaaatatttggtcctcaaaataattactagtaaatgtacctatgcaaagtactaatgaaattaagattactaatgattgttttg-a |
23247805 |
T |
|
| Q |
111 |
nnnnnnnnncttccagagatgtgccatagatgatgatacttattcaattgttgaaaatacacacacactaaaagggggcttgctttactaatttagaata |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23247804 |
attttttttcttccagagatgtgccatagatgatgatacttattcaattgttggaaatacacacacactaaaagggggcttgctttactaatttagaata |
23247705 |
T |
|
| Q |
211 |
ttacttgttgcaaaagggagcttgctttactttggaaaagc |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23247704 |
ttacttgttgcaaaagggagcttgctttactttgaaaaagc |
23247664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 24252739 - 24252502
Alignment:
| Q |
11 |
cacagatgtaaaggtaaatatttggtcctcaaaataattactagtaaatgtacctatgcaaagtactaatgaaattaagattactaatgattgttttgca |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24252739 |
cacaaatgtaaaggtaaatatttggtcctcaaaacacttactagtaaatgtacctatgcaaagtactaatgaaattaagattactaatgattgttttg-a |
24252641 |
T |
|
| Q |
111 |
nnnnnnnnncttccagagatgtgccatagatgatgatacttattcaattgttgaaaatacacacacactaaaagggggcttgctttactaatttagaata |
210 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24252640 |
attttttttcttctagagatgtcccatagatgatgatacttattcaattgttggaaatacacacac--taaaagggggcttgctttactaatttagaata |
24252543 |
T |
|
| Q |
211 |
ttacttgttgcaaaagggagcttgctttactttggaaaagc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24252542 |
ttacttgttgcaaaagggagcttgctttactttggaaaagc |
24252502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University