View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_116 (Length: 266)
Name: NF19358_high_116
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_116 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 45468602 - 45468364
Alignment:
| Q |
1 |
ttaaataataatagaataatgtacactgtctcaatcgccnnnnnnnggaagtaggtattagctatcaagaaaattgggtgtcatgagccatatttggtgg |
100 |
Q |
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| T |
45468602 |
ttaaataataatagaataatgtacactgtctcaatcgccaaaaaaaggaagtaggtattagctatcaagaaaattgggtgtcatgagccatatttggtgg |
45468503 |
T |
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| Q |
101 |
cagatgctattgctactgcctgtgcccacactttgagtcgtgccttcacatctcttggatcatcacctacataatataaaacaaaaatgttaaattttga |
200 |
Q |
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| T |
45468502 |
cagatgctattgctactgcctgtgcccacactttgagtcgtgccttcacatctcttggatcatcacctacataatataaaacaaaaatgttaaattttga |
45468403 |
T |
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| Q |
201 |
attaatcgaaggcttacaacgtgagcgcttatcatatat |
239 |
Q |
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| T |
45468402 |
attaatcgaaggcttacaacgtgagcgcttatcatatat |
45468364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 15 - 258
Target Start/End: Original strand, 39220471 - 39220717
Alignment:
| Q |
15 |
aataatgtacactgtctcaatcgccnnnnnnnggaagtaggtattagctatcaagaaaattgggtgtcatgagccatatttggtggcagatgctattgct |
114 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39220471 |
aataatgtacactgtctcaatcgccaaaaaaaggaagtaggtattagctatcaagaaaattgggtgtcatgagccgtatttggtggcagatgctattgct |
39220570 |
T |
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| Q |
115 |
actgcctgtgcccacactttgagtcgtgccttcacatctcttggatcatcacctacataatata---aaacaaaaatgttaaattttgaattaatcgaag |
211 |
Q |
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| T |
39220571 |
actgcctgtgcccacactttcagtcatgccttcacatctgttggatcatcacctacataataaaaataaaaaaaaatgtcaaattctaaattaatccaac |
39220670 |
T |
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| Q |
212 |
gcttacaacgtgagcgcttatcatatattacaaaaataagttgaaaa |
258 |
Q |
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| T |
39220671 |
gcttgtaacttaagcgcttatcatatattataaaaataagctgaaaa |
39220717 |
T |
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