View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_12 (Length: 551)
Name: NF19358_high_12
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 21 - 539
Target Start/End: Original strand, 38002 - 38520
Alignment:
| Q |
21 |
atacttactcatgtgatcttcgtgaatggatgttggcgtttttaactctaaatcatgaagaggaggagaaaggttattgatcatattatctttaacctta |
120 |
Q |
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| T |
38002 |
atacttactcatgtgatcttcgtgaatggatgttggcgttcttaactctaaatcatgaagaggaggagaaaggttattgatcatattatctttaacctta |
38101 |
T |
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| Q |
121 |
caaatttcattgtgttgagtcttgttaagagtctaaatgtctgagaaatatcaagagagaacatgggtgtcattgtgtgagtgagttttgtcttcaagta |
220 |
Q |
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| T |
38102 |
caaatttcattgtgttgagtcttgttaagagtctaaatgtctgagaaatatcaatagagaacatgagtgtcattgtgtgagtgagttttgtcttcaaata |
38201 |
T |
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| Q |
221 |
tcgtggtgaactatttatatgcctaattatatgatcaacaatatgtccttaaatgctaatatatgataactattcaataccaatatatgtgttgatatgt |
320 |
Q |
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| T |
38202 |
tcgtggtgaactatttatatgcctaattatatgatcaacaatatgttcttaaatgctaatatatgataactattcaataccgatatatgtgttgatatgt |
38301 |
T |
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| Q |
321 |
ctctaagtatgtgtttaatgtttatacttgttactattgaaatcatgtgaatatatgtgttgttctgtttacttatgttctacctttcatggttttcggt |
420 |
Q |
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| T |
38302 |
ctctaagtatgtgtttaatgtttatacttgttcctattgaaatcatgtgaatatatgtgttgttctgtttacttatgttctacctttcatggttttcggt |
38401 |
T |
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| Q |
421 |
tacacatcattcattgcttttgtgtgtttgtgaatattgcgtttttagataaactgagtttcattgagttgaagcttcaatggttttgttttatgtgtca |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38402 |
tacacatcattcattgcttttgtgtgtttgtgaatattgcgtttttagataaactgagtttcattgagttgaagcttcaatgtttttgttttatgtgtca |
38501 |
T |
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| Q |
521 |
tgtacactttaacttgatg |
539 |
Q |
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| T |
38502 |
tgtacactttaacttgatg |
38520 |
T |
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