View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19358_high_121 (Length: 257)

Name: NF19358_high_121

Description: NF19358

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19358_high_121

[»] chr6 (5 HSPs)

Alignment Details

Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 5)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 214; E-Value: 1e-117

Query Start/End: Original strand, 11 - 257

Target Start/End: Original strand, 26453765 - 26454011

Alignment:

Q	11	atactagcatcaacataagccattgataagttcaattttcaaaacaaaatgaagatgaatcatctcattatttgtatcttttttgctatagcaannnnnn	110	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26453765	atactagcatcaacataagtcattgataagttcaattttcaaaataaaatgaagatgaatcatctcattatttgtatcttttttgctatagcaatttttt	26453864	T

Q	111	natgtaaggcttcaattgcaaagccttttctacaatctccaacacaattcctcccatcaaccttagaggaaccaattgcaaaacccttagaggaacctga	210	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26453865	tatgtaaggcttcaattgcaaagccttttctacaatctccaacacaattcctcccatcaaccttagaggaaccaattgcaaaacccttagaggaacctga	26453964	T

Q	211	tgtaagaaaaggtaggaaaaagcctccgcgacatcctcaatcaccac	257	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26453965	tgtaagaaaaggtaggaaaaagcctccacgacatcctcaatcaccac	26454011	T

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Target: chr6; HSP #2

Raw Score: 88; E-Value: 2e-42

Query Start/End: Original strand, 11 - 183

Target Start/End: Original strand, 26504006 - 26504193

Alignment:

Q	11	atactagcatcaacataagccattgataa---gttcaattttcaaaacaaaatgaagatgaatcatctcattatttgtatcttttttgctatagcaannn	107	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|
T	26504006	atactaacatcaacataagccattgataataagttcaattttcaaaacaaaatgaagatgaatcatctcattatttgtatcttttttgctataacaattt	26504105	T

Q	108	nnnnatgta------------aggcttcaattgcaaagccttttctacaatctccaacacaattcctcccatcaaccttagaggaacc	183	Q
		\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|
T	26504106	ttttatgtaatgctgctgaggatgcttcaattgcaaagccttttctaccatctccaacacaattcctcccatcagccttggaggaacc	26504193	T

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Target: chr6; HSP #3

Raw Score: 78; E-Value: 2e-36

Query Start/End: Original strand, 11 - 104

Target Start/End: Complemental strand, 26521751 - 26521658

Alignment:

Q	11	atactagcatcaacataagccattgataagttcaattttcaaaacaaaatgaagatgaatcatctcattatttgtatcttttttgctatagcaa	104	Q
		\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26521751	atactaacatcaatataagccattgataagttcaatttttaaaacaaaatgaagatgaatcatctcattatatgtatcttttttgctatagcaa	26521658	T

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Target: chr6; HSP #4

Raw Score: 63; E-Value: 2e-27

Query Start/End: Original strand, 11 - 81

Target Start/End: Original strand, 26521577 - 26521647

Alignment:

Q	11	atactagcatcaacataagccattgataagttcaattttcaaaacaaaatgaagatgaatcatctcattat	81	Q
		\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	26521577	atactagcattaatataagccattgataagttcaattttcaaaacaaaatgaagatgaatcatctcattat	26521647	T

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Target: chr6; HSP #5

Raw Score: 39; E-Value: 0.0000000000004

Query Start/End: Original strand, 195 - 257

Target Start/End: Original strand, 26504181 - 26504243

Alignment:

Q	195	ccttagaggaacctgatgtaagaaaaggtaggaaaaagcctccgcgacatcctcaatcaccac	257	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|
T	26504181	ccttggaggaacctgatgtgagaaaaggtaggaaaaagcctccaccacctcctcgatcaccac	26504243	T

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