View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19358_high_134 (Length: 248)
Name: NF19358_high_134
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_134 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 35190967 - 35190750
Alignment:
| Q |
13 |
aaaatgttacgagtcttgcattaattagattaaagtgctcagggtggtgctggtacttaaaactgaaagcatgttgtcatagtaaataaaactatcactt |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35190967 |
aaaatgttacgagtctcgcattaattagattaaagtgctcagggtggtgctggtacttaaaactgaaagcatgttgtcatggtaaataaaactatcactt |
35190868 |
T |
|
| Q |
113 |
aaaaatgcaagtttgtatgatctcacacttttttatatgcaatattgcaatccacaagaacagttaacaacagaaacaagagagagttgaagctaatgat |
212 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35190867 |
aataatgcaagtttgtatgatctcacacttttttatatgcaatattgcaatccacaagaacaattaacaacagaaacaagagagagttgaagctaatgaa |
35190768 |
T |
|
| Q |
213 |
aggaaacgtaccttagtt |
230 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
35190767 |
aggaaatgtaccttagtt |
35190750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University