View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_136 (Length: 246)
Name: NF19358_high_136
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_136 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 981046 - 980833
Alignment:
| Q |
17 |
caaaggagggcgtacgaaatggtttgttctaatgtg-agaatcatattttggttgtatttttgcaaatttagtttcaggttacctaccatactataactt |
115 |
Q |
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| T |
981046 |
caaaggagggcatacgaaatggtt-gttccaatgtgtaaaatcatattttggtagtatttttgcaaatttagtttcaggttacctatcatactctaactt |
980948 |
T |
|
| Q |
116 |
tttctttgctttaacataatgtgataggagacagatttgagaagacccatttgtcgagctgaggttatagtgacaacttggttaaggaaagacagaacct |
215 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||| |
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| T |
980947 |
tttctttgctttaacataatatgataggagacagaattgagaagacccatttgtcgagctgaggttatagtgacaacttggttgaagaaagacggaacct |
980848 |
T |
|
| Q |
216 |
attcaactaaatatg |
230 |
Q |
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||||||||||||||| |
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| T |
980847 |
attcaactaaatatg |
980833 |
T |
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