View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_151 (Length: 235)
Name: NF19358_high_151
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_151 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 14540415 - 14540276
Alignment:
| Q |
17 |
agaaacaagaaagtctataaatagttgtggaattcatcggttccatcaaaattcatcattcatggaagatgagttctgcagggcagaattgcttcaacga |
116 |
Q |
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| T |
14540415 |
agaaataagaaagcctataaatagttgtggaattcatcggttccatcaaaattcatcattcatggaagatgagttctgcaaggcagaattgcttcgacga |
14540316 |
T |
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| Q |
117 |
aagccttaaaacgaagatgtattgtagttaattgtgaagt |
156 |
Q |
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| T |
14540315 |
aagccttaaaacgaaggtgtattgtagctaattgtgaagt |
14540276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 14541959 - 14541761
Alignment:
| Q |
17 |
agaaacaagaaagtctataaatagttgtggaattcatcggttccatcaaaattcatcattcatggaagatgagttctgcagggcagaattgcttcaacga |
116 |
Q |
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|||||| |||||| |||||||||||| ||||||||||||||||||| ||||||||||||| |||| | ||||||||||||| |||||||||| |||| |
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| T |
14541959 |
agaaacgagaaagcctataaatagttatggaattcatcggttccattgaaattcatcattcgtggatggcaagttctgcagggctgaattgcttcgacga |
14541860 |
T |
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| Q |
117 |
aagccttaaaacgaagatgtattgtagttaattgtgaagttattccttgtgtgtttggtttggaagccgcggaggaatgccgacatattagtgatatgga |
216 |
Q |
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| T |
14541859 |
aggccttaaaacgaaggtgtattgtagctaattgtgaggtaattccttgtgtgtttggttcggaagccgcata-gaatgcagccatatcagtgatatgga |
14541761 |
T |
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