View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19358_high_156 (Length: 227)

Name: NF19358_high_156
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19358_high_156
NF19358_high_156
[»] chr7 (8 HSPs)
chr7 (7-115)||(29176435-29176543)
chr7 (110-158)||(29185736-29185784)
chr7 (181-227)||(29186324-29186370)
chr7 (165-209)||(45088871-45088915)
chr7 (165-218)||(43539117-43539170)
chr7 (173-209)||(21580819-21580855)
chr7 (165-209)||(26825419-26825463)
chr7 (173-217)||(35751385-35751429)
[»] chr8 (10 HSPs)
chr8 (165-225)||(28436553-28436613)
chr8 (175-209)||(40067043-40067077)
chr8 (165-209)||(56826-56870)
chr8 (173-209)||(2279579-2279615)
chr8 (165-209)||(10732797-10732841)
chr8 (165-209)||(32232399-32232443)
chr8 (170-209)||(2181128-2181167)
chr8 (170-209)||(3456843-3456882)
chr8 (165-225)||(574379-574439)
chr8 (165-209)||(18148824-18148868)
[»] chr5 (7 HSPs)
chr5 (157-216)||(40730210-40730269)
chr5 (165-209)||(10515356-10515400)
chr5 (164-207)||(42608889-42608932)
chr5 (165-209)||(18589889-18589933)
chr5 (165-209)||(22585647-22585691)
chr5 (170-213)||(32793058-32793102)
chr5 (165-209)||(40715971-40716015)
[»] chr2 (6 HSPs)
chr2 (165-204)||(1692737-1692776)
chr2 (168-209)||(19159939-19159980)
chr2 (168-209)||(37119280-37119321)
chr2 (165-209)||(14776608-14776652)
chr2 (163-207)||(19967411-19967455)
chr2 (165-205)||(40295484-40295524)
[»] chr6 (4 HSPs)
chr6 (165-209)||(13496111-13496155)
chr6 (164-209)||(28951393-28951438)
chr6 (173-209)||(2445302-2445338)
chr6 (170-218)||(16125039-16125087)
[»] chr4 (10 HSPs)
chr4 (165-209)||(24837495-24837539)
chr4 (164-208)||(56309323-56309367)
chr4 (170-225)||(6459930-6459985)
chr4 (171-209)||(9196214-9196252)
chr4 (168-209)||(38297940-38297981)
chr4 (165-209)||(1184905-1184949)
chr4 (165-209)||(19479499-19479543)
chr4 (165-209)||(29737668-29737712)
chr4 (170-218)||(49952582-49952630)
chr4 (169-209)||(56298146-56298186)
[»] chr3 (11 HSPs)
chr3 (165-209)||(23332645-23332689)
chr3 (165-204)||(36170117-36170156)
chr3 (165-218)||(8747249-8747301)
chr3 (171-216)||(52543707-52543752)
chr3 (165-209)||(4615191-4615235)
chr3 (165-209)||(20222970-20223014)
chr3 (169-209)||(24088323-24088363)
chr3 (165-209)||(38130981-38131025)
chr3 (165-209)||(38559918-38559962)
chr3 (169-209)||(38573595-38573635)
chr3 (165-225)||(44799061-44799121)
[»] chr1 (17 HSPs)
chr1 (165-209)||(4770650-4770694)
chr1 (165-209)||(36467047-36467091)
chr1 (170-209)||(29701342-29701381)
chr1 (167-209)||(10841897-10841939)
chr1 (167-209)||(15382841-15382883)
chr1 (175-209)||(24583712-24583746)
chr1 (167-209)||(28832193-28832235)
chr1 (176-209)||(13953896-13953929)
chr1 (165-202)||(30799293-30799330)
chr1 (165-209)||(5553023-5553067)
chr1 (172-216)||(14556573-14556617)
chr1 (165-209)||(27853350-27853394)
chr1 (165-209)||(32944731-32944775)
chr1 (173-209)||(33175264-33175300)
chr1 (165-209)||(41032926-41032970)
chr1 (165-209)||(49222811-49222855)
chr1 (165-209)||(49843429-49843473)
[»] scaffold0008 (1 HSPs)
scaffold0008 (170-209)||(122891-122930)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 29176435 - 29176543
Alignment:
Q  7 tttctctctgtcttactaacctctcttttagataatataaagttaataaatttatatgaaaaaattatagaaactaataaatgtaggagtagtgttaaaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  29176435 tttctctctgtcttactaacctctcttttagataatataaagttaataaatttatatgaaaaaattatagaaactaataaatctagtagtagtgttaaaa 29176534  T
Q  107 ggaacatat 115  Q
    |||||||||    
T  29176535 ggaacatat 29176543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 29185736 - 29185784
Alignment:
Q  110 acatatacaataatttattaaatttcacttaatttaactattctattaa 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29185736 acatatacaataatttattaaatttcacttaatttaactattctattaa 29185784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 29186324 - 29186370
Alignment:
Q  181 ttaattgatatgaacaatgcataatatatctaaagtccagagttcta 227  Q
    |||||||||||||||||||||||||||||| || || ||||||||||    
T  29186324 ttaattgatatgaacaatgcataatatatccaaggttcagagttcta 29186370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 45088871 - 45088915
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||| ||||||||| ||||| |||||||||||||||||||||    
T  45088871 tccttgtaagcttaactcaattggtatgaacaatgcataatatat 45088915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 43539170 - 43539117
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatatctaaagtcc 218  Q
    |||||||||||||| || | |||||| |||||||||||||||||| ||| ||||    
T  43539170 tccttgtgagcttagctcagttgataggaacaatgcataatatatgtaaggtcc 43539117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 21580819 - 21580855
Alignment:
Q  173 agcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  21580819 agcttaactcaattgatatggacaatgcataatatat 21580855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 26825463 - 26825419
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||| ||||||||| || |||||||||| ||||||||||||||||    
T  26825463 tcctcgtgagcttacctcaattgatatggacaatgcataatatat 26825419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 35751429 - 35751385
Alignment:
Q  173 agcttaacttaattgatatgaacaatgcataatatatctaaagtc 217  Q
    |||||| || |||||||||||| |||||||||||||| |||||||    
T  35751429 agcttagctcaattgatatgaataatgcataatatatgtaaagtc 35751385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 28436613 - 28436553
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatatctaaagtccagagttc 225  Q
    |||| ||||||||| || ||||||||| ||||||||||||||||| ||||||||| |||||    
T  28436613 tcctagtgagcttagctcaattgatatcaacaatgcataatatatgtaaagtccaaagttc 28436553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 40067077 - 40067043
Alignment:
Q  175 cttaacttaattgatatgaacaatgcataatatat 209  Q
    |||||||||||||||||||||||||||||||||||    
T  40067077 cttaacttaattgatatgaacaatgcataatatat 40067043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 56870 - 56826
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||||||||||||| ||||| |||| ||||||||||||||||    
T  56870 tccttgtgagcttaactcaattggtatggacaatgcataatatat 56826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 2279615 - 2279579
Alignment:
Q  173 agcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||||||||||||||||||||||| ||||||||||||    
T  2279615 agcttaacttaattgatatgaacattgcataatatat 2279579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 10732841 - 10732797
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||| |||||||||||| ||||| |||||||||||||||||||||    
T  10732841 tcctcgtgagcttaactcaattggtatgaacaatgcataatatat 10732797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 32232443 - 32232399
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||| |||||||||  |||||||||||||||||||||||||||||    
T  32232443 tcctcgtgagcttaggttaattgatatgaacaatgcataatatat 32232399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 2181128 - 2181167
Alignment:
Q  170 gtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||||||||||||||||| || ||||||||||||||||||    
T  2181128 gtgagcttaacttaattggtaggaacaatgcataatatat 2181167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 3456882 - 3456843
Alignment:
Q  170 gtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  3456882 gtgaacttaactcaattgatatgaacaatgcataatatat 3456843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 574379 - 574439
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatatctaaagtccagagttc 225  Q
    |||||||||||||| || | |||||||  |||||||||||||||| ||| |||| ||||||    
T  574379 tccttgtgagcttagctcagttgatatagacaatgcataatatatgtaaggtccggagttc 574439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 18148868 - 18148824
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||| |||||||||||| | || ||||||||||||||||||||||    
T  18148868 tcctcgtgagcttaactcagttaatatgaacaatgcataatatat 18148824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 40730269 - 40730210
Alignment:
Q  157 aattacaatccttgtgagcttaacttaattgatatgaacaatgcataatatatctaaagt 216  Q
    ||||||| |||| ||||||||| || | ||||||||||||||||||||||||| ||||||    
T  40730269 aattacagtcctcgtgagcttagctaagttgatatgaacaatgcataatatatataaagt 40730210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 10515356 - 10515400
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||||||||||||||| |||||||| |||||| |||||||||    
T  10515356 tccttgtgagcttaacttagttgatatggacaatgaataatatat 10515400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 42608932 - 42608889
Alignment:
Q  164 atccttgtgagcttaacttaattgatatgaacaatgcataatat 207  Q
    |||||||| ||||||||| | |||||||||||||||||||||||    
T  42608932 atccttgtaagcttaactcagttgatatgaacaatgcataatat 42608889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 18589933 - 18589889
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||| |||||||||||| | ||| |||||||||||||||||||||    
T  18589933 tcctcgtgagcttaactcagttggtatgaacaatgcataatatat 18589889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 22585647 - 22585691
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||| ||| |||||||| | |||||||||||||||||||||||||    
T  22585647 tcctcgtgggcttaactcagttgatatgaacaatgcataatatat 22585691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 32793102 - 32793058
Alignment:
Q  170 gtgagcttaacttaattgatatgaac-aatgcataatatatctaa 213  Q
    |||||||||||||| |||||| |||| ||||||||||||||||||    
T  32793102 gtgagcttaacttagttgataagaacaaatgcataatatatctaa 32793058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 40716015 - 40715971
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||| ||||||||| || |||||||||| ||||||||||||||||    
T  40716015 tcctcgtgagcttagctcaattgatatggacaatgcataatatat 40715971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 1692776 - 1692737
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataa 204  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  1692776 tccttgtgagcttaactcaattgatatgaacaatgcataa 1692737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 19159939 - 19159980
Alignment:
Q  168 ttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||| ||||||||| | |||||||||||||||||||||||||    
T  19159939 ttgtaagcttaactcagttgatatgaacaatgcataatatat 19159980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 37119321 - 37119280
Alignment:
Q  168 ttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||| |||||| | |||||||||||||||||||||||||    
T  37119321 ttgtgagtttaactcagttgatatgaacaatgcataatatat 37119280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 14776608 - 14776652
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||| ||||| |||||||||||| |||||||||||||||| ||||    
T  14776608 tcctcgtgagtttaacttaattggtatgaacaatgcataaaatat 14776652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 19967411 - 19967455
Alignment:
Q  163 aatccttgtgagcttaacttaattgatatgaacaatgcataatat 207  Q
    |||||| ||||||||| || | |||||||||||||||||||||||    
T  19967411 aatcctcgtgagcttagctcagttgatatgaacaatgcataatat 19967455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 40295524 - 40295484
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataat 205  Q
    |||| |||| ||||||| |||||||||||||||||||||||    
T  40295524 tcctcgtgaacttaactcaattgatatgaacaatgcataat 40295484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 13496111 - 13496155
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||| |||||||||||| | |||||||||||||||||||||||||    
T  13496111 tcctcgtgagcttaactcagttgatatgaacaatgcataatatat 13496155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 28951393 - 28951438
Alignment:
Q  164 atccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||| |||||||||||| | ||| |||||||||||||||||||||    
T  28951393 atcctcgtgagcttaactcagttggtatgaacaatgcataatatat 28951438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 2445302 - 2445338
Alignment:
Q  173 agcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||||| | |||||||||||||||||||||||||    
T  2445302 agcttaactcagttgatatgaacaatgcataatatat 2445338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 16125087 - 16125039
Alignment:
Q  170 gtgagcttaacttaattgatatgaacaatgcataatatatctaaagtcc 218  Q
    |||||||||| ||| ||| |||||||||||||||||||||  |||||||    
T  16125087 gtgagcttaaattagttggtatgaacaatgcataatatatgcaaagtcc 16125039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 24837539 - 24837495
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||    
T  24837539 tcctcgtgagcttaacttagttgatatgaacaatacataatatat 24837495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 56309367 - 56309323
Alignment:
Q  164 atccttgtgagcttaacttaattgatatgaacaatgcataatata 208  Q
    ||||| |||||||||||| |||||||||| |||||||||||||||    
T  56309367 atcctcgtgagcttaactcaattgatatggacaatgcataatata 56309323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 6459985 - 6459930
Alignment:
Q  170 gtgagcttaacttaattgatatgaacaatgcataatatatctaaagtccagagttc 225  Q
    |||||||||||| | |||||||| |||||||||||||||| ||| |||| ||||||    
T  6459985 gtgagcttaactcagttgatatggacaatgcataatatatgtaaggtccggagttc 6459930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 9196214 - 9196252
Alignment:
Q  171 tgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  9196214 tgagcttaacttagttgatatggacaatgcataatatat 9196252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 38297940 - 38297981
Alignment:
Q  168 ttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||||||| || |||||||||| ||||||||||||||||    
T  38297940 ttgtgagcttacctcaattgatatggacaatgcataatatat 38297981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 1184905 - 1184949
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||||||||||||||||||||| ||| | ||||| ||||||||||    
T  1184905 tccttgtgagcttaacttaattaatagggacaattcataatatat 1184949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 19479543 - 19479499
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||||||||||||| || | || ||||||||||||||||||||||    
T  19479543 tccttgtgagcttagctcagttaatatgaacaatgcataatatat 19479499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 29737668 - 29737712
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||||||||||| ||| ||| || ||||||||||||||||||    
T  29737668 tccttgtgagcttaatttagttgctaggaacaatgcataatatat 29737712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 49952630 - 49952582
Alignment:
Q  170 gtgagcttaacttaattgatatgaacaatgcataatatatctaaagtcc 218  Q
    |||||||||||| ||||||| || |||||||||||||||| ||| ||||    
T  49952630 gtgagcttaactcaattgatttggacaatgcataatatatgtaaggtcc 49952582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 56298186 - 56298146
Alignment:
Q  169 tgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||||| |||||| ||||| |||||||||||||||||||||    
T  56298186 tgtgagtttaactcaattgttatgaacaatgcataatatat 56298146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 23332645 - 23332689
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||| |||| ||||||||| |||||||||||||||||||||||||    
T  23332645 tcctcgtgaacttaacttagttgatatgaacaatgcataatatat 23332689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 36170156 - 36170117
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataa 204  Q
    |||| |||||||||||| ||||||||||||||||||||||    
T  36170156 tcctcgtgagcttaactcaattgatatgaacaatgcataa 36170117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 8747301 - 8747249
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatatctaaagtcc 218  Q
    ||||||||||||||||||| ||| |||| |||||||||||||||| ||| ||||    
T  8747301 tccttgtgagcttaacttagttggtatg-acaatgcataatatatgtaaggtcc 8747249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 52543752 - 52543707
Alignment:
Q  171 tgagcttaacttaattgatatgaacaatgcataatatatctaaagt 216  Q
    ||||||||||||| ||| || |||||||||||||||||| ||||||    
T  52543752 tgagcttaacttagttggtaggaacaatgcataatatatgtaaagt 52543707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 4615235 - 4615191
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||||||||||||||| | | |||||||||||||||| ||||    
T  4615235 tccttgtgagcttaacttattcggtatgaacaatgcataaaatat 4615191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 20223014 - 20222970
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||| ||||||||||||| ||| || ||||||||||||||||||    
T  20223014 tccttatgagcttaacttagttggtaagaacaatgcataatatat 20222970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 24088363 - 24088323
Alignment:
Q  169 tgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||||||||| ||||||||||| ||| ||||||||||||||    
T  24088363 tgtgagcttagcttaattgataggaataatgcataatatat 24088323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 38131025 - 38130981
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||||||||||||| | ||| |||| ||||||||||||||||    
T  38131025 tccttgtgagcttaactcagttggtatggacaatgcataatatat 38130981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 38559962 - 38559918
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||||||| ||||| | ||| |||||||||||||||||||||    
T  38559962 tccttgtgagcgtaactcagttggtatgaacaatgcataatatat 38559918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 209
Target Start/End: Complemental strand, 38573635 - 38573595
Alignment:
Q  169 tgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||||||||| | |||||| ||||||||||||||||||    
T  38573635 tgtgagcttaactcagttgataagaacaatgcataatatat 38573595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 44799121 - 44799061
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatatctaaagtccagagttc 225  Q
    |||| |||||||||||||| |||||| ||||||| ||||| ||||  ||||||||| ||||    
T  44799121 tcctcgtgagcttaacttatttgataagaacaatacataaaatatgcaaagtccagggttc 44799061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 4770694 - 4770650
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||||||||||||| | |||||||||||||||||| ||||||    
T  4770694 tccttgtgagcttaactcagttgatatgaacaatgcatgatatat 4770650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 36467091 - 36467047
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||||||||||| | |||||||||| ||||||||||||||||    
T  36467091 tccttgtgagcttaattcaattgatatggacaatgcataatatat 36467047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 29701381 - 29701342
Alignment:
Q  170 gtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  29701381 gtgagcttaacttagttgatatggacaatgcataatatat 29701342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 10841897 - 10841939
Alignment:
Q  167 cttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||||||||||| | |||||||| ||||||||||||||||    
T  10841897 cttgtgagcttaactcagttgatatggacaatgcataatatat 10841939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 15382883 - 15382841
Alignment:
Q  167 cttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||||||||||| | ||||||||||||||| |||||||||    
T  15382883 cttgtgagcttaactcagttgatatgaacaatgtataatatat 15382841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 24583746 - 24583712
Alignment:
Q  175 cttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||| |||||||||||||||||||||||||||    
T  24583746 cttaactcaattgatatgaacaatgcataatatat 24583712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 28832235 - 28832193
Alignment:
Q  167 cttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    ||||||||||||||| | ||| |||||||||||||||||||||    
T  28832235 cttgtgagcttaactcagttggtatgaacaatgcataatatat 28832193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 13953929 - 13953896
Alignment:
Q  176 ttaacttaattgatatgaacaatgcataatatat 209  Q
    |||||| |||||||||||||||||||||||||||    
T  13953929 ttaactcaattgatatgaacaatgcataatatat 13953896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 30799330 - 30799293
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcat 202  Q
    |||||||||||||| || ||||||||||||||||||||    
T  30799330 tccttgtgagcttagctaaattgatatgaacaatgcat 30799293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Complemental strand, 5553067 - 5553023
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||||||| |||||||| | ||||||||||||||| |||||||||    
T  5553067 tccttgtgggcttaactcagttgatatgaacaatgtataatatat 5553023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 14556617 - 14556573
Alignment:
Q  172 gagcttaacttaattgatatgaacaatgcataatatatctaaagt 216  Q
    |||||||||| ||| ||||||||||||| ||||||||| ||||||    
T  14556617 gagcttaactcaatcgatatgaacaatgtataatatatataaagt 14556573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 27853350 - 27853394
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||| |||||||||||| | ||| |||||||||||||||||||||    
T  27853350 tcctcgtgagcttaactcagttggtatgaacaatgcataatatat 27853394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 32944731 - 32944775
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||||||||||||| |||| ||| |||| ||||||||||||||||    
T  32944731 tccttgtgagcttagcttagttggtatggacaatgcataatatat 32944775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 33175264 - 33175300
Alignment:
Q  173 agcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  33175264 agcttagcttaattgatatggacaatgcataatatat 33175300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 41032926 - 41032970
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||| |||||||||||| | |||||||||||||||||||| ||||    
T  41032926 tcctcgtgagcttaactcagttgatatgaacaatgcataaaatat 41032970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 49222811 - 49222855
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||| |||||||||||| |||||||| |||||||||| |||||||    
T  49222811 tcctcgtgagcttaactcaattgataggaacaatgcacaatatat 49222855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 49843429 - 49843473
Alignment:
Q  165 tccttgtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||| |||||||||||| ||||| | |||||||||||||||||||    
T  49843429 tcctcgtgagcttaactcaattggtttgaacaatgcataatatat 49843473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 122891 - 122930
Alignment:
Q  170 gtgagcttaacttaattgatatgaacaatgcataatatat 209  Q
    |||||||||||| ||||| |||||||||||||||||||||    
T  122891 gtgagcttaactcaattggtatgaacaatgcataatatat 122930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University