View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19358_high_164 (Length: 219)
Name: NF19358_high_164
Description: NF19358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19358_high_164 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 25951565 - 25951412
Alignment:
| Q |
17 |
attgggtccttttcaagatgggtttaattatcttgaaaagaggtttgcaaatgaaaaagataaaattttgaagtggagagattctatgcttaaaataggt |
116 |
Q |
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| T |
25951565 |
attgggtccttttcaagatgggtttaattatcttgaaaagaggtttgcaaatgaaaaagataaaattttgaagtggagagactctatgcttaaaataggt |
25951466 |
T |
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| Q |
117 |
ggtcttgctggctttgttttcaattctaggtatatctatcctttgtaatcacca |
170 |
Q |
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| T |
25951465 |
ggtcttgctggctttgttttcaattctaggtatatctatattttgtaatcacca |
25951412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 25960816 - 25960663
Alignment:
| Q |
17 |
attgggtccttttcaagatgggtttaattatcttgaaaagaggtttgcaaatgaaaaagataaaattttgaagtggagagattctatgcttaaaataggt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25960816 |
attgggtccttttcaagatgggtttaattatcttgaaaagaggtttgcaaatgaaaaagataaaattttgaagtggagagactctatgcttaaaataggt |
25960717 |
T |
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| Q |
117 |
ggtcttgctggctttgttttcaattctaggtatatctatcctttgtaatcacca |
170 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25960716 |
ggtcttgctggctttgttttcaattctaggtatatctatattttgtaatcacca |
25960663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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